Results 61 - 80 of 207 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 95636 | 0.75 | 0.450827 |
Target: 5'- gGAGCggcugGGCG-AGCGCGAcGCGC-GGCg -3' miRNA: 3'- -CUUGa----CCGUaUCGCGCUuCGCGaCCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 90732 | 0.75 | 0.460277 |
Target: 5'- -cGCUGGgcc-GCGCcuGAGGCGCUGGCg -3' miRNA: 3'- cuUGACCguauCGCG--CUUCGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 69751 | 0.73 | 0.539261 |
Target: 5'- gGAGgaGGCG-AGCGCGggGgGC-GGCg -3' miRNA: 3'- -CUUgaCCGUaUCGCGCuuCgCGaCCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 127334 | 0.73 | 0.539261 |
Target: 5'- -cGCgggGGCcggAGCgGCGggGCGCUGGg -3' miRNA: 3'- cuUGa--CCGua-UCG-CGCuuCGCGACCg -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 27248 | 0.73 | 0.549485 |
Target: 5'- --cCUGGgGUGGgGCGggGUGUgcgGGCa -3' miRNA: 3'- cuuGACCgUAUCgCGCuuCGCGa--CCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 78 | 0.73 | 0.549485 |
Target: 5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3' miRNA: 3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 137761 | 0.73 | 0.549485 |
Target: 5'- -cGCgggGGCGgGGUGCGggGCGCgcccccgGGCc -3' miRNA: 3'- cuUGa--CCGUaUCGCGCuuCGCGa------CCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 124626 | 0.73 | 0.559769 |
Target: 5'- cAGC-GGCAUcuGCGCGAagaaGGCGCUGGg -3' miRNA: 3'- cUUGaCCGUAu-CGCGCU----UCGCGACCg -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 74696 | 0.73 | 0.570106 |
Target: 5'- gGAGCUGGCcgccGCGCG-GGCGCggaaccgGGCc -3' miRNA: 3'- -CUUGACCGuau-CGCGCuUCGCGa------CCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 76753 | 0.73 | 0.570106 |
Target: 5'- cGGACgUGGCGcaccccgcguucuucGGCGCGGAcgcccccGCGCUGGCg -3' miRNA: 3'- -CUUG-ACCGUa--------------UCGCGCUU-------CGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 46544 | 0.73 | 0.539261 |
Target: 5'- -cGCUGGCAgucgucccgcAGCGCG-AGCGCUGcuGCg -3' miRNA: 3'- cuUGACCGUa---------UCGCGCuUCGCGAC--CG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 66611 | 0.73 | 0.539261 |
Target: 5'- -uGCUGG-AUGGCGCGcguGCGCaUGGCc -3' miRNA: 3'- cuUGACCgUAUCGCGCuu-CGCG-ACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 97995 | 0.75 | 0.460277 |
Target: 5'- uGAAgUGGgAggcGGCG-GggGCGCUGGCg -3' miRNA: 3'- -CUUgACCgUa--UCGCgCuuCGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 99447 | 0.74 | 0.488254 |
Target: 5'- ----gGGCGgaagAGCGCGGgccgacccgcggcGGCGCUGGCc -3' miRNA: 3'- cuugaCCGUa---UCGCGCU-------------UCGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 137052 | 0.74 | 0.489233 |
Target: 5'- cGGACcgucGGCA-GGCGCgGAGGCGCgGGCa -3' miRNA: 3'- -CUUGa---CCGUaUCGCG-CUUCGCGaCCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 101441 | 0.74 | 0.499075 |
Target: 5'- ----aGGC--GGCGCGGuccAGCGCUGGCc -3' miRNA: 3'- cuugaCCGuaUCGCGCU---UCGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 130494 | 0.74 | 0.499075 |
Target: 5'- cGGCgagGGCcccgacgacGUGGCGC-AGGCGCUGGCc -3' miRNA: 3'- cUUGa--CCG---------UAUCGCGcUUCGCGACCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 97740 | 0.73 | 0.529102 |
Target: 5'- cGGCUGGCA-GGgGCGggGCggGCUcGGCg -3' miRNA: 3'- cUUGACCGUaUCgCGCuuCG--CGA-CCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 29525 | 0.73 | 0.529102 |
Target: 5'- --cCUGGCugcagAGCGCGAAGCucGCgGGCc -3' miRNA: 3'- cuuGACCGua---UCGCGCUUCG--CGaCCG- -5' |
|||||||
23778 | 5' | -54.9 | NC_005261.1 | + | 84126 | 0.73 | 0.529102 |
Target: 5'- ----gGGCAgcGgGCGggGuCGCUGGCg -3' miRNA: 3'- cuugaCCGUauCgCGCuuC-GCGACCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home