miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 47413 0.66 0.825202
Target:  5'- gUGCA-CA-CGCG--GUACUCCCGGUg -3'
miRNA:   3'- -ACGUaGUcGCGCuuCGUGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 2556 0.66 0.816497
Target:  5'- gGCGcUgGGCGCGGgcguguGGUACUCcCCGGg- -3'
miRNA:   3'- aCGU-AgUCGCGCU------UCGUGAG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 66358 0.66 0.816497
Target:  5'- gGC--CAGCGCGAGcucGCGC-CCCGGc- -3'
miRNA:   3'- aCGuaGUCGCGCUU---CGUGaGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 21697 0.66 0.816497
Target:  5'- cGCGUCGcGgGCG-AGCGCUUCaCGGa- -3'
miRNA:   3'- aCGUAGU-CgCGCuUCGUGAGG-GCCaa -5'
23779 3' -57.2 NC_005261.1 + 94854 0.66 0.807619
Target:  5'- gGCcUCGGCGCucgcGCACggCCCGGg- -3'
miRNA:   3'- aCGuAGUCGCGcuu-CGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 2178 0.66 0.807619
Target:  5'- gUGCgaGUCGGCGCucAGCAgCagCCGGUUg -3'
miRNA:   3'- -ACG--UAGUCGCGcuUCGU-GagGGCCAA- -5'
23779 3' -57.2 NC_005261.1 + 40087 0.66 0.807619
Target:  5'- cGCuggCAGCGCGucGCACgccagCCCGc-- -3'
miRNA:   3'- aCGua-GUCGCGCuuCGUGa----GGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 37246 0.66 0.798576
Target:  5'- cGCGUggaCAGCGCGGAGaccaUCCUGGc- -3'
miRNA:   3'- aCGUA---GUCGCGCUUCgug-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 128510 0.66 0.798576
Target:  5'- cGCggCGGCG-GAGGCAgcCUCCUGGc- -3'
miRNA:   3'- aCGuaGUCGCgCUUCGU--GAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 59950 0.66 0.789379
Target:  5'- aGCcgCAGCGCGgcGCGCgugaaCGGg- -3'
miRNA:   3'- aCGuaGUCGCGCuuCGUGagg--GCCaa -5'
23779 3' -57.2 NC_005261.1 + 1796 0.66 0.789379
Target:  5'- aGCcgCAGCG-GcGGCGC-CCCGGg- -3'
miRNA:   3'- aCGuaGUCGCgCuUCGUGaGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 132362 0.66 0.780035
Target:  5'- cGCcgCGGCGCGcucgccGCGCUCgCGGc- -3'
miRNA:   3'- aCGuaGUCGCGCuu----CGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 49792 0.66 0.780035
Target:  5'- cGCGcCAGCGCGAGacgucGCcCUCCgCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCUU-----CGuGAGG-GCCaa -5'
23779 3' -57.2 NC_005261.1 + 49262 0.66 0.777205
Target:  5'- gGCGUCGGCGCGcacguccgcgaggaAGGCGCagaagCCCGcGg- -3'
miRNA:   3'- aCGUAGUCGCGC--------------UUCGUGa----GGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 395 0.67 0.770554
Target:  5'- gGCggCGGCgGCGGcAGCGgUCCUGGUc -3'
miRNA:   3'- aCGuaGUCG-CGCU-UCGUgAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 19169 0.67 0.770554
Target:  5'- cGgAUCA-CGCGAAGCAgCUgCCGGg- -3'
miRNA:   3'- aCgUAGUcGCGCUUCGU-GAgGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 138066 0.67 0.770554
Target:  5'- gGCggCGGCgGCGGcAGCGgUCCUGGUc -3'
miRNA:   3'- aCGuaGUCG-CGCU-UCGUgAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 33605 0.67 0.760947
Target:  5'- gGCGcCGGCGCGGgcGGCGgggCCCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCU--UCGUga-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 116519 0.67 0.760947
Target:  5'- cGCggCGGCGCGAGGCccgccGCUCCgCGc-- -3'
miRNA:   3'- aCGuaGUCGCGCUUCG-----UGAGG-GCcaa -5'
23779 3' -57.2 NC_005261.1 + 13117 0.67 0.760947
Target:  5'- gGCGUCGGCggccGCGggGCGCguguggUCGGUg -3'
miRNA:   3'- aCGUAGUCG----CGCuuCGUGag----GGCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.