Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23779 | 3' | -57.2 | NC_005261.1 | + | 59950 | 0.66 | 0.789379 |
Target: 5'- aGCcgCAGCGCGgcGCGCgugaaCGGg- -3' miRNA: 3'- aCGuaGUCGCGCuuCGUGagg--GCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 128510 | 0.66 | 0.798576 |
Target: 5'- cGCggCGGCG-GAGGCAgcCUCCUGGc- -3' miRNA: 3'- aCGuaGUCGCgCUUCGU--GAGGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 132362 | 0.66 | 0.780035 |
Target: 5'- cGCcgCGGCGCGcucgccGCGCUCgCGGc- -3' miRNA: 3'- aCGuaGUCGCGCuu----CGUGAGgGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 2178 | 0.66 | 0.807619 |
Target: 5'- gUGCgaGUCGGCGCucAGCAgCagCCGGUUg -3' miRNA: 3'- -ACG--UAGUCGCGcuUCGU-GagGGCCAA- -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 49792 | 0.66 | 0.780035 |
Target: 5'- cGCGcCAGCGCGAGacgucGCcCUCCgCGGg- -3' miRNA: 3'- aCGUaGUCGCGCUU-----CGuGAGG-GCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 47413 | 0.66 | 0.825202 |
Target: 5'- gUGCA-CA-CGCG--GUACUCCCGGUg -3' miRNA: 3'- -ACGUaGUcGCGCuuCGUGAGGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 2556 | 0.66 | 0.816497 |
Target: 5'- gGCGcUgGGCGCGGgcguguGGUACUCcCCGGg- -3' miRNA: 3'- aCGU-AgUCGCGCU------UCGUGAG-GGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 49262 | 0.66 | 0.777205 |
Target: 5'- gGCGUCGGCGCGcacguccgcgaggaAGGCGCagaagCCCGcGg- -3' miRNA: 3'- aCGUAGUCGCGC--------------UUCGUGa----GGGC-Caa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 21697 | 0.66 | 0.816497 |
Target: 5'- cGCGUCGcGgGCG-AGCGCUUCaCGGa- -3' miRNA: 3'- aCGUAGU-CgCGCuUCGUGAGG-GCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 37246 | 0.66 | 0.798576 |
Target: 5'- cGCGUggaCAGCGCGGAGaccaUCCUGGc- -3' miRNA: 3'- aCGUA---GUCGCGCUUCgug-AGGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 40087 | 0.66 | 0.807619 |
Target: 5'- cGCuggCAGCGCGucGCACgccagCCCGc-- -3' miRNA: 3'- aCGua-GUCGCGCuuCGUGa----GGGCcaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 66358 | 0.66 | 0.816497 |
Target: 5'- gGC--CAGCGCGAGcucGCGC-CCCGGc- -3' miRNA: 3'- aCGuaGUCGCGCUU---CGUGaGGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 94854 | 0.66 | 0.807619 |
Target: 5'- gGCcUCGGCGCucgcGCACggCCCGGg- -3' miRNA: 3'- aCGuAGUCGCGcuu-CGUGa-GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 1796 | 0.66 | 0.789379 |
Target: 5'- aGCcgCAGCG-GcGGCGC-CCCGGg- -3' miRNA: 3'- aCGuaGUCGCgCuUCGUGaGGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 100467 | 0.67 | 0.741387 |
Target: 5'- cGCccgCcGCGCGGuAGCACaCCCGGUa -3' miRNA: 3'- aCGua-GuCGCGCU-UCGUGaGGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 71468 | 0.67 | 0.731454 |
Target: 5'- aGCAUCAG-Ga-AGGC-CUCCCGGUg -3' miRNA: 3'- aCGUAGUCgCgcUUCGuGAGGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 33605 | 0.67 | 0.760947 |
Target: 5'- gGCGcCGGCGCGGgcGGCGgggCCCGGg- -3' miRNA: 3'- aCGUaGUCGCGCU--UCGUga-GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 4395 | 0.67 | 0.751221 |
Target: 5'- cGCGgccgggCGGCgGCGgcGCGCUgCCGGg- -3' miRNA: 3'- aCGUa-----GUCG-CGCuuCGUGAgGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 116519 | 0.67 | 0.760947 |
Target: 5'- cGCggCGGCGCGAGGCccgccGCUCCgCGc-- -3' miRNA: 3'- aCGuaGUCGCGCUUCG-----UGAGG-GCcaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 93639 | 0.67 | 0.760947 |
Target: 5'- aGCAgCAGCGCGAGGUccGCguacgcccaCCGGUc -3' miRNA: 3'- aCGUaGUCGCGCUUCG--UGag-------GGCCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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