miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 12445 0.76 0.267341
Target:  5'- gGCGUCGGcCGCGucGGCGC-CCCGGUa -3'
miRNA:   3'- aCGUAGUC-GCGCu-UCGUGaGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 71959 0.76 0.280475
Target:  5'- gGCGUCGGCGCGggGCGCggagcgCgCGGc- -3'
miRNA:   3'- aCGUAGUCGCGCuuCGUGa-----GgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 122286 0.75 0.300423
Target:  5'- aGCAUCAGCGCGGccccgcugccgcaGGCGacgCCCGGg- -3'
miRNA:   3'- aCGUAGUCGCGCU-------------UCGUga-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 82047 0.74 0.338121
Target:  5'- gUGCGUCAGCGCGGGcCACgUCgCCGGg- -3'
miRNA:   3'- -ACGUAGUCGCGCUUcGUG-AG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 71413 0.74 0.345904
Target:  5'- gGCGUcCGGCGCGggGCcCggCCCGGg- -3'
miRNA:   3'- aCGUA-GUCGCGCuuCGuGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 73949 0.73 0.386719
Target:  5'- gGCuugCAGaCGCGggGCGCgCCCGGg- -3'
miRNA:   3'- aCGua-GUC-GCGCuuCGUGaGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 30000 0.73 0.40391
Target:  5'- gGCAgCGGCGCGucugaGCUCCCGGUg -3'
miRNA:   3'- aCGUaGUCGCGCuucg-UGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 14070 0.72 0.466749
Target:  5'- cGCGUCcagGGCcacgucgGCGAAGCACUCgCGGUc -3'
miRNA:   3'- aCGUAG---UCG-------CGCUUCGUGAGgGCCAa -5'
23779 3' -57.2 NC_005261.1 + 24389 0.72 0.467697
Target:  5'- gGCucGUCGGCgGCGggGCGgUCCUGGg- -3'
miRNA:   3'- aCG--UAGUCG-CGCuuCGUgAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 124630 0.72 0.467697
Target:  5'- gGCAUCuGCGCGAagaaGGCGCUgggccgcaCCCGGc- -3'
miRNA:   3'- aCGUAGuCGCGCU----UCGUGA--------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 29530 0.72 0.467697
Target:  5'- cUGCAg-AGCGCGAAGCucGCgggCCCGGa- -3'
miRNA:   3'- -ACGUagUCGCGCUUCG--UGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 28780 0.72 0.477232
Target:  5'- gGCcgCGGCGCG-GGCGCUCgCGGc- -3'
miRNA:   3'- aCGuaGUCGCGCuUCGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 53943 0.72 0.486862
Target:  5'- aGCG-CGGCGCGccGCGCUCgCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCuuCGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 65823 0.71 0.50639
Target:  5'- gGCggCGGCGCGAAGCug-CCCGaGUg -3'
miRNA:   3'- aCGuaGUCGCGCUUCGugaGGGC-CAa -5'
23779 3' -57.2 NC_005261.1 + 134233 0.71 0.516279
Target:  5'- aGCGUCGGCGUGgcGCACgcgCCCu--- -3'
miRNA:   3'- aCGUAGUCGCGCuuCGUGa--GGGccaa -5'
23779 3' -57.2 NC_005261.1 + 64913 0.71 0.516279
Target:  5'- gUGguUCAGCGCGgcGUGCUCCUGc-- -3'
miRNA:   3'- -ACguAGUCGCGCuuCGUGAGGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 32380 0.71 0.536283
Target:  5'- gUGCAggcgCGGCGCGGcGGCG-UCCCGGa- -3'
miRNA:   3'- -ACGUa---GUCGCGCU-UCGUgAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 84 0.71 0.536283
Target:  5'- gGCGg-GGUGCGggGCGCgccCCCGGg- -3'
miRNA:   3'- aCGUagUCGCGCuuCGUGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 137767 0.71 0.536283
Target:  5'- gGCGg-GGUGCGggGCGCgccCCCGGg- -3'
miRNA:   3'- aCGUagUCGCGCuuCGUGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 32505 0.7 0.556549
Target:  5'- gGCAUCGGCGgGggGUccGCgccgcgCCCGGc- -3'
miRNA:   3'- aCGUAGUCGCgCuuCG--UGa-----GGGCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.