miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 116199 0.7 0.577031
Target:  5'- cGCGUCGcCGCaGAAGCGCUCCaGGa- -3'
miRNA:   3'- aCGUAGUcGCG-CUUCGUGAGGgCCaa -5'
23779 3' -57.2 NC_005261.1 + 35463 0.7 0.587336
Target:  5'- gGCG-CGGCGCGc-GCGCgUCCCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCuuCGUG-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 58919 0.7 0.587336
Target:  5'- cGCAcCAGCGCGcccgcGCACgccgCCCGGa- -3'
miRNA:   3'- aCGUaGUCGCGCuu---CGUGa---GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 64983 0.7 0.597674
Target:  5'- cGCcgCAGCGCGugcAGGUGCUCCaggaGGUc -3'
miRNA:   3'- aCGuaGUCGCGC---UUCGUGAGGg---CCAa -5'
23779 3' -57.2 NC_005261.1 + 4088 0.69 0.608039
Target:  5'- gGCAgCGGCGCcgucaCGCUCCCGGUg -3'
miRNA:   3'- aCGUaGUCGCGcuuc-GUGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 107283 0.69 0.628815
Target:  5'- cGCAUCAG-GCGGcaGGCACUCCgccgCGGc- -3'
miRNA:   3'- aCGUAGUCgCGCU--UCGUGAGG----GCCaa -5'
23779 3' -57.2 NC_005261.1 + 11869 0.69 0.639212
Target:  5'- aGCGUCAGCuGCGggGCGagCCCGc-- -3'
miRNA:   3'- aCGUAGUCG-CGCuuCGUgaGGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 46483 0.69 0.658942
Target:  5'- gUGCAgcUCGGCgcccuccGCGggGCGCagCCCGGc- -3'
miRNA:   3'- -ACGU--AGUCG-------CGCuuCGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 66901 0.69 0.659979
Target:  5'- aGCGUCAGCGUGuugcAGUACgugCCCaGGa- -3'
miRNA:   3'- aCGUAGUCGCGCu---UCGUGa--GGG-CCaa -5'
23779 3' -57.2 NC_005261.1 + 64676 0.69 0.659979
Target:  5'- cGCcgUGGUGCGGcaccgGGCGCgUCCCGGg- -3'
miRNA:   3'- aCGuaGUCGCGCU-----UCGUG-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 86207 0.68 0.670333
Target:  5'- cGCGUCGGCGCGccgaaccGGgGCagCCGGUg -3'
miRNA:   3'- aCGUAGUCGCGCu------UCgUGagGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 80298 0.68 0.670333
Target:  5'- gUGCGU-GGCGuUGAAGCGCUCaCGGUa -3'
miRNA:   3'- -ACGUAgUCGC-GCUUCGUGAGgGCCAa -5'
23779 3' -57.2 NC_005261.1 + 53008 0.68 0.680654
Target:  5'- gGCGUCGGCGCagcucgccAGCGCUUCCGcGg- -3'
miRNA:   3'- aCGUAGUCGCGcu------UCGUGAGGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 100046 0.68 0.690934
Target:  5'- gGCGUCAGCuCGAGcGCGCcgccgccgCCCGGg- -3'
miRNA:   3'- aCGUAGUCGcGCUU-CGUGa-------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 106643 0.68 0.690934
Target:  5'- aGC-UCGGCGaCGucGCGCUCgCCGGc- -3'
miRNA:   3'- aCGuAGUCGC-GCuuCGUGAG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 54904 0.68 0.701164
Target:  5'- gUGCcgCAGCGCGcguagcGAGCACUcgCCCGcGa- -3'
miRNA:   3'- -ACGuaGUCGCGC------UUCGUGA--GGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 51002 0.68 0.710319
Target:  5'- cGCGUgGGCGCGGcgggagcucggcgAGCGCcaCCCGGc- -3'
miRNA:   3'- aCGUAgUCGCGCU-------------UCGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 98263 0.68 0.711333
Target:  5'- cGCGUCAG-GCGgcGCGCgcguucgacgCCCGGc- -3'
miRNA:   3'- aCGUAGUCgCGCuuCGUGa---------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 29578 0.68 0.721433
Target:  5'- cUGCAgCGGCGCGugcAGgGCUgCCGGg- -3'
miRNA:   3'- -ACGUaGUCGCGCu--UCgUGAgGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 110231 0.68 0.721433
Target:  5'- cGCcucCAGCGUGGgcGGCGCggcgCCCGGg- -3'
miRNA:   3'- aCGua-GUCGCGCU--UCGUGa---GGGCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.