Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23779 | 3' | -57.2 | NC_005261.1 | + | 13117 | 0.67 | 0.760947 |
Target: 5'- gGCGUCGGCggccGCGggGCGCguguggUCGGUg -3' miRNA: 3'- aCGUAGUCG----CGCuuCGUGag----GGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 4395 | 0.67 | 0.751221 |
Target: 5'- cGCGgccgggCGGCgGCGgcGCGCUgCCGGg- -3' miRNA: 3'- aCGUa-----GUCG-CGCuuCGUGAgGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 42186 | 0.67 | 0.751221 |
Target: 5'- cGCAg-GGCGCGAGcCGCUCCaCGGc- -3' miRNA: 3'- aCGUagUCGCGCUUcGUGAGG-GCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 62077 | 0.67 | 0.751221 |
Target: 5'- cGCcUC-GCGCGAGGCGCUgCCCa--- -3' miRNA: 3'- aCGuAGuCGCGCUUCGUGA-GGGccaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 51886 | 0.67 | 0.751221 |
Target: 5'- cGCggCAGCaGCGgcGCGCUacaucgCCCGGg- -3' miRNA: 3'- aCGuaGUCG-CGCuuCGUGA------GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 100467 | 0.67 | 0.741387 |
Target: 5'- cGCccgCcGCGCGGuAGCACaCCCGGUa -3' miRNA: 3'- aCGua-GuCGCGCU-UCGUGaGGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 71468 | 0.67 | 0.731454 |
Target: 5'- aGCAUCAG-Ga-AGGC-CUCCCGGUg -3' miRNA: 3'- aCGUAGUCgCgcUUCGuGAGGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 29578 | 0.68 | 0.721433 |
Target: 5'- cUGCAgCGGCGCGugcAGgGCUgCCGGg- -3' miRNA: 3'- -ACGUaGUCGCGCu--UCgUGAgGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 110231 | 0.68 | 0.721433 |
Target: 5'- cGCcucCAGCGUGGgcGGCGCggcgCCCGGg- -3' miRNA: 3'- aCGua-GUCGCGCU--UCGUGa---GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 98263 | 0.68 | 0.711333 |
Target: 5'- cGCGUCAG-GCGgcGCGCgcguucgacgCCCGGc- -3' miRNA: 3'- aCGUAGUCgCGCuuCGUGa---------GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 51002 | 0.68 | 0.710319 |
Target: 5'- cGCGUgGGCGCGGcgggagcucggcgAGCGCcaCCCGGc- -3' miRNA: 3'- aCGUAgUCGCGCU-------------UCGUGa-GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 54904 | 0.68 | 0.701164 |
Target: 5'- gUGCcgCAGCGCGcguagcGAGCACUcgCCCGcGa- -3' miRNA: 3'- -ACGuaGUCGCGC------UUCGUGA--GGGC-Caa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 100046 | 0.68 | 0.690934 |
Target: 5'- gGCGUCAGCuCGAGcGCGCcgccgccgCCCGGg- -3' miRNA: 3'- aCGUAGUCGcGCUU-CGUGa-------GGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 106643 | 0.68 | 0.690934 |
Target: 5'- aGC-UCGGCGaCGucGCGCUCgCCGGc- -3' miRNA: 3'- aCGuAGUCGC-GCuuCGUGAG-GGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 53008 | 0.68 | 0.680654 |
Target: 5'- gGCGUCGGCGCagcucgccAGCGCUUCCGcGg- -3' miRNA: 3'- aCGUAGUCGCGcu------UCGUGAGGGC-Caa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 86207 | 0.68 | 0.670333 |
Target: 5'- cGCGUCGGCGCGccgaaccGGgGCagCCGGUg -3' miRNA: 3'- aCGUAGUCGCGCu------UCgUGagGGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 80298 | 0.68 | 0.670333 |
Target: 5'- gUGCGU-GGCGuUGAAGCGCUCaCGGUa -3' miRNA: 3'- -ACGUAgUCGC-GCUUCGUGAGgGCCAa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 66901 | 0.69 | 0.659979 |
Target: 5'- aGCGUCAGCGUGuugcAGUACgugCCCaGGa- -3' miRNA: 3'- aCGUAGUCGCGCu---UCGUGa--GGG-CCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 64676 | 0.69 | 0.659979 |
Target: 5'- cGCcgUGGUGCGGcaccgGGCGCgUCCCGGg- -3' miRNA: 3'- aCGuaGUCGCGCU-----UCGUG-AGGGCCaa -5' |
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23779 | 3' | -57.2 | NC_005261.1 | + | 46483 | 0.69 | 0.658942 |
Target: 5'- gUGCAgcUCGGCgcccuccGCGggGCGCagCCCGGc- -3' miRNA: 3'- -ACGU--AGUCG-------CGCuuCGUGa-GGGCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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