miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 84 0.71 0.536283
Target:  5'- gGCGg-GGUGCGggGCGCgccCCCGGg- -3'
miRNA:   3'- aCGUagUCGCGCuuCGUGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 395 0.67 0.770554
Target:  5'- gGCggCGGCgGCGGcAGCGgUCCUGGUc -3'
miRNA:   3'- aCGuaGUCG-CGCU-UCGUgAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 1796 0.66 0.789379
Target:  5'- aGCcgCAGCG-GcGGCGC-CCCGGg- -3'
miRNA:   3'- aCGuaGUCGCgCuUCGUGaGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 2178 0.66 0.807619
Target:  5'- gUGCgaGUCGGCGCucAGCAgCagCCGGUUg -3'
miRNA:   3'- -ACG--UAGUCGCGcuUCGU-GagGGCCAA- -5'
23779 3' -57.2 NC_005261.1 + 2556 0.66 0.816497
Target:  5'- gGCGcUgGGCGCGGgcguguGGUACUCcCCGGg- -3'
miRNA:   3'- aCGU-AgUCGCGCU------UCGUGAG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 4088 0.69 0.608039
Target:  5'- gGCAgCGGCGCcgucaCGCUCCCGGUg -3'
miRNA:   3'- aCGUaGUCGCGcuuc-GUGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 4395 0.67 0.751221
Target:  5'- cGCGgccgggCGGCgGCGgcGCGCUgCCGGg- -3'
miRNA:   3'- aCGUa-----GUCG-CGCuuCGUGAgGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 11869 0.69 0.639212
Target:  5'- aGCGUCAGCuGCGggGCGagCCCGc-- -3'
miRNA:   3'- aCGUAGUCG-CGCuuCGUgaGGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 12445 0.76 0.267341
Target:  5'- gGCGUCGGcCGCGucGGCGC-CCCGGUa -3'
miRNA:   3'- aCGUAGUC-GCGCu-UCGUGaGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 13117 0.67 0.760947
Target:  5'- gGCGUCGGCggccGCGggGCGCguguggUCGGUg -3'
miRNA:   3'- aCGUAGUCG----CGCuuCGUGag----GGCCAa -5'
23779 3' -57.2 NC_005261.1 + 14070 0.72 0.466749
Target:  5'- cGCGUCcagGGCcacgucgGCGAAGCACUCgCGGUc -3'
miRNA:   3'- aCGUAG---UCG-------CGCUUCGUGAGgGCCAa -5'
23779 3' -57.2 NC_005261.1 + 19169 0.67 0.770554
Target:  5'- cGgAUCA-CGCGAAGCAgCUgCCGGg- -3'
miRNA:   3'- aCgUAGUcGCGCUUCGU-GAgGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 21697 0.66 0.816497
Target:  5'- cGCGUCGcGgGCG-AGCGCUUCaCGGa- -3'
miRNA:   3'- aCGUAGU-CgCGCuUCGUGAGG-GCCaa -5'
23779 3' -57.2 NC_005261.1 + 24389 0.72 0.467697
Target:  5'- gGCucGUCGGCgGCGggGCGgUCCUGGg- -3'
miRNA:   3'- aCG--UAGUCG-CGCuuCGUgAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 28780 0.72 0.477232
Target:  5'- gGCcgCGGCGCG-GGCGCUCgCGGc- -3'
miRNA:   3'- aCGuaGUCGCGCuUCGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 29530 0.72 0.467697
Target:  5'- cUGCAg-AGCGCGAAGCucGCgggCCCGGa- -3'
miRNA:   3'- -ACGUagUCGCGCUUCG--UGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 29578 0.68 0.721433
Target:  5'- cUGCAgCGGCGCGugcAGgGCUgCCGGg- -3'
miRNA:   3'- -ACGUaGUCGCGCu--UCgUGAgGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 30000 0.73 0.40391
Target:  5'- gGCAgCGGCGCGucugaGCUCCCGGUg -3'
miRNA:   3'- aCGUaGUCGCGCuucg-UGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 32380 0.71 0.536283
Target:  5'- gUGCAggcgCGGCGCGGcGGCG-UCCCGGa- -3'
miRNA:   3'- -ACGUa---GUCGCGCU-UCGUgAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 32505 0.7 0.556549
Target:  5'- gGCAUCGGCGgGggGUccGCgccgcgCCCGGc- -3'
miRNA:   3'- aCGUAGUCGCgCuuCG--UGa-----GGGCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.