miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 33605 0.67 0.760947
Target:  5'- gGCGcCGGCGCGGgcGGCGgggCCCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCU--UCGUga-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 35463 0.7 0.587336
Target:  5'- gGCG-CGGCGCGc-GCGCgUCCCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCuuCGUG-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 37246 0.66 0.798576
Target:  5'- cGCGUggaCAGCGCGGAGaccaUCCUGGc- -3'
miRNA:   3'- aCGUA---GUCGCGCUUCgug-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 40087 0.66 0.807619
Target:  5'- cGCuggCAGCGCGucGCACgccagCCCGc-- -3'
miRNA:   3'- aCGua-GUCGCGCuuCGUGa----GGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 42186 0.67 0.751221
Target:  5'- cGCAg-GGCGCGAGcCGCUCCaCGGc- -3'
miRNA:   3'- aCGUagUCGCGCUUcGUGAGG-GCCaa -5'
23779 3' -57.2 NC_005261.1 + 46483 0.69 0.658942
Target:  5'- gUGCAgcUCGGCgcccuccGCGggGCGCagCCCGGc- -3'
miRNA:   3'- -ACGU--AGUCG-------CGCuuCGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 47413 0.66 0.825202
Target:  5'- gUGCA-CA-CGCG--GUACUCCCGGUg -3'
miRNA:   3'- -ACGUaGUcGCGCuuCGUGAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 49262 0.66 0.777205
Target:  5'- gGCGUCGGCGCGcacguccgcgaggaAGGCGCagaagCCCGcGg- -3'
miRNA:   3'- aCGUAGUCGCGC--------------UUCGUGa----GGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 49792 0.66 0.780035
Target:  5'- cGCGcCAGCGCGAGacgucGCcCUCCgCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCUU-----CGuGAGG-GCCaa -5'
23779 3' -57.2 NC_005261.1 + 51002 0.68 0.710319
Target:  5'- cGCGUgGGCGCGGcgggagcucggcgAGCGCcaCCCGGc- -3'
miRNA:   3'- aCGUAgUCGCGCU-------------UCGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 51886 0.67 0.751221
Target:  5'- cGCggCAGCaGCGgcGCGCUacaucgCCCGGg- -3'
miRNA:   3'- aCGuaGUCG-CGCuuCGUGA------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 53008 0.68 0.680654
Target:  5'- gGCGUCGGCGCagcucgccAGCGCUUCCGcGg- -3'
miRNA:   3'- aCGUAGUCGCGcu------UCGUGAGGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 53943 0.72 0.486862
Target:  5'- aGCG-CGGCGCGccGCGCUCgCGGg- -3'
miRNA:   3'- aCGUaGUCGCGCuuCGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 54904 0.68 0.701164
Target:  5'- gUGCcgCAGCGCGcguagcGAGCACUcgCCCGcGa- -3'
miRNA:   3'- -ACGuaGUCGCGC------UUCGUGA--GGGC-Caa -5'
23779 3' -57.2 NC_005261.1 + 58919 0.7 0.587336
Target:  5'- cGCAcCAGCGCGcccgcGCACgccgCCCGGa- -3'
miRNA:   3'- aCGUaGUCGCGCuu---CGUGa---GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 59950 0.66 0.789379
Target:  5'- aGCcgCAGCGCGgcGCGCgugaaCGGg- -3'
miRNA:   3'- aCGuaGUCGCGCuuCGUGagg--GCCaa -5'
23779 3' -57.2 NC_005261.1 + 62077 0.67 0.751221
Target:  5'- cGCcUC-GCGCGAGGCGCUgCCCa--- -3'
miRNA:   3'- aCGuAGuCGCGCUUCGUGA-GGGccaa -5'
23779 3' -57.2 NC_005261.1 + 64676 0.69 0.659979
Target:  5'- cGCcgUGGUGCGGcaccgGGCGCgUCCCGGg- -3'
miRNA:   3'- aCGuaGUCGCGCU-----UCGUG-AGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 64913 0.71 0.516279
Target:  5'- gUGguUCAGCGCGgcGUGCUCCUGc-- -3'
miRNA:   3'- -ACguAGUCGCGCuuCGUGAGGGCcaa -5'
23779 3' -57.2 NC_005261.1 + 64983 0.7 0.597674
Target:  5'- cGCcgCAGCGCGugcAGGUGCUCCaggaGGUc -3'
miRNA:   3'- aCGuaGUCGCGC---UUCGUGAGGg---CCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.