miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 3' -57.2 NC_005261.1 + 138066 0.67 0.770554
Target:  5'- gGCggCGGCgGCGGcAGCGgUCCUGGUc -3'
miRNA:   3'- aCGuaGUCG-CGCU-UCGUgAGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 137767 0.71 0.536283
Target:  5'- gGCGg-GGUGCGggGCGCgccCCCGGg- -3'
miRNA:   3'- aCGUagUCGCGCuuCGUGa--GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 134233 0.71 0.516279
Target:  5'- aGCGUCGGCGUGgcGCACgcgCCCu--- -3'
miRNA:   3'- aCGUAGUCGCGCuuCGUGa--GGGccaa -5'
23779 3' -57.2 NC_005261.1 + 132362 0.66 0.780035
Target:  5'- cGCcgCGGCGCGcucgccGCGCUCgCGGc- -3'
miRNA:   3'- aCGuaGUCGCGCuu----CGUGAGgGCCaa -5'
23779 3' -57.2 NC_005261.1 + 128510 0.66 0.798576
Target:  5'- cGCggCGGCG-GAGGCAgcCUCCUGGc- -3'
miRNA:   3'- aCGuaGUCGCgCUUCGU--GAGGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 124630 0.72 0.467697
Target:  5'- gGCAUCuGCGCGAagaaGGCGCUgggccgcaCCCGGc- -3'
miRNA:   3'- aCGUAGuCGCGCU----UCGUGA--------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 122286 0.75 0.300423
Target:  5'- aGCAUCAGCGCGGccccgcugccgcaGGCGacgCCCGGg- -3'
miRNA:   3'- aCGUAGUCGCGCU-------------UCGUga-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 116519 0.67 0.760947
Target:  5'- cGCggCGGCGCGAGGCccgccGCUCCgCGc-- -3'
miRNA:   3'- aCGuaGUCGCGCUUCG-----UGAGG-GCcaa -5'
23779 3' -57.2 NC_005261.1 + 116199 0.7 0.577031
Target:  5'- cGCGUCGcCGCaGAAGCGCUCCaGGa- -3'
miRNA:   3'- aCGUAGUcGCG-CUUCGUGAGGgCCaa -5'
23779 3' -57.2 NC_005261.1 + 110231 0.68 0.721433
Target:  5'- cGCcucCAGCGUGGgcGGCGCggcgCCCGGg- -3'
miRNA:   3'- aCGua-GUCGCGCU--UCGUGa---GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 107283 0.69 0.628815
Target:  5'- cGCAUCAG-GCGGcaGGCACUCCgccgCGGc- -3'
miRNA:   3'- aCGUAGUCgCGCU--UCGUGAGG----GCCaa -5'
23779 3' -57.2 NC_005261.1 + 106643 0.68 0.690934
Target:  5'- aGC-UCGGCGaCGucGCGCUCgCCGGc- -3'
miRNA:   3'- aCGuAGUCGC-GCuuCGUGAG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 100467 0.67 0.741387
Target:  5'- cGCccgCcGCGCGGuAGCACaCCCGGUa -3'
miRNA:   3'- aCGua-GuCGCGCU-UCGUGaGGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 100046 0.68 0.690934
Target:  5'- gGCGUCAGCuCGAGcGCGCcgccgccgCCCGGg- -3'
miRNA:   3'- aCGUAGUCGcGCUU-CGUGa-------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 98263 0.68 0.711333
Target:  5'- cGCGUCAG-GCGgcGCGCgcguucgacgCCCGGc- -3'
miRNA:   3'- aCGUAGUCgCGCuuCGUGa---------GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 94854 0.66 0.807619
Target:  5'- gGCcUCGGCGCucgcGCACggCCCGGg- -3'
miRNA:   3'- aCGuAGUCGCGcuu-CGUGa-GGGCCaa -5'
23779 3' -57.2 NC_005261.1 + 93639 0.67 0.760947
Target:  5'- aGCAgCAGCGCGAGGUccGCguacgcccaCCGGUc -3'
miRNA:   3'- aCGUaGUCGCGCUUCG--UGag-------GGCCAa -5'
23779 3' -57.2 NC_005261.1 + 86207 0.68 0.670333
Target:  5'- cGCGUCGGCGCGccgaaccGGgGCagCCGGUg -3'
miRNA:   3'- aCGUAGUCGCGCu------UCgUGagGGCCAa -5'
23779 3' -57.2 NC_005261.1 + 82047 0.74 0.338121
Target:  5'- gUGCGUCAGCGCGGGcCACgUCgCCGGg- -3'
miRNA:   3'- -ACGUAGUCGCGCUUcGUG-AG-GGCCaa -5'
23779 3' -57.2 NC_005261.1 + 80298 0.68 0.670333
Target:  5'- gUGCGU-GGCGuUGAAGCGCUCaCGGUa -3'
miRNA:   3'- -ACGUAgUCGC-GCUUCGUGAGgGCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.