miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23779 5' -55.4 NC_005261.1 + 35785 0.66 0.921156
Target:  5'- gGAGGCCCGcGGGCGCcaUGGcgcggGAc- -3'
miRNA:   3'- gCUUCGGGCuCUCGCGcaACCa----CUag -5'
23779 5' -55.4 NC_005261.1 + 105293 0.66 0.909414
Target:  5'- -cGAGCCCGGGcGCGCGagcgcGG-GGUCc -3'
miRNA:   3'- gcUUCGGGCUCuCGCGCaa---CCaCUAG- -5'
23779 5' -55.4 NC_005261.1 + 17648 0.66 0.896709
Target:  5'- gCGAGGCCgaUGAGgauGGCGCGccgcgUGGcggGAUCa -3'
miRNA:   3'- -GCUUCGG--GCUC---UCGCGCa----ACCa--CUAG- -5'
23779 5' -55.4 NC_005261.1 + 13121 0.66 0.890003
Target:  5'- uCGgcGgCCGcGGGGCGCGU--GUGGUCg -3'
miRNA:   3'- -GCuuCgGGC-UCUCGCGCAacCACUAG- -5'
23779 5' -55.4 NC_005261.1 + 98687 0.66 0.890003
Target:  5'- cCGggGCCgGAG-GCGCGgccggagcUGGggccggGGUCc -3'
miRNA:   3'- -GCuuCGGgCUCuCGCGCa-------ACCa-----CUAG- -5'
23779 5' -55.4 NC_005261.1 + 44216 0.67 0.883065
Target:  5'- gGcGGCCCGGGAGCGCGcgcUGcUGGc- -3'
miRNA:   3'- gCuUCGGGCUCUCGCGCa--ACcACUag -5'
23779 5' -55.4 NC_005261.1 + 58687 0.67 0.882359
Target:  5'- gGAGGCCCGggccgucAGGGCGCGccgcugagaGGUGcgCc -3'
miRNA:   3'- gCUUCGGGC-------UCUCGCGCaa-------CCACuaG- -5'
23779 5' -55.4 NC_005261.1 + 12706 0.67 0.867762
Target:  5'- uGAAGCCCGAGcggcucgGGCGCGcgGGc---- -3'
miRNA:   3'- gCUUCGGGCUC-------UCGCGCaaCCacuag -5'
23779 5' -55.4 NC_005261.1 + 59064 0.67 0.860909
Target:  5'- gCGcGGCCgCgGAGAGCGCGcgcgGGUGcgCc -3'
miRNA:   3'- -GCuUCGG-G-CUCUCGCGCaa--CCACuaG- -5'
23779 5' -55.4 NC_005261.1 + 98184 0.67 0.853095
Target:  5'- uGGAGCcgCCGGGGGCGCGgcGGg---- -3'
miRNA:   3'- gCUUCG--GGCUCUCGCGCaaCCacuag -5'
23779 5' -55.4 NC_005261.1 + 30776 0.68 0.845076
Target:  5'- cCGGAGCCCGGc--CGCGgcGGUGGa- -3'
miRNA:   3'- -GCUUCGGGCUcucGCGCaaCCACUag -5'
23779 5' -55.4 NC_005261.1 + 71968 0.68 0.845076
Target:  5'- gCGggGCgCG-GAGCGCGcggcaGGUGcgCa -3'
miRNA:   3'- -GCuuCGgGCuCUCGCGCaa---CCACuaG- -5'
23779 5' -55.4 NC_005261.1 + 22075 0.68 0.819866
Target:  5'- gCGggGCUCGAGGGgGCGccGcGUGGg- -3'
miRNA:   3'- -GCuuCGGGCUCUCgCGCaaC-CACUag -5'
23779 5' -55.4 NC_005261.1 + 34496 0.68 0.811104
Target:  5'- uGGAGUgggUCGAGGGCGCucUGGUGggCa -3'
miRNA:   3'- gCUUCG---GGCUCUCGCGcaACCACuaG- -5'
23779 5' -55.4 NC_005261.1 + 127647 0.68 0.802176
Target:  5'- gCGgcGCCgGGGGGCGCGcgGGU--UCg -3'
miRNA:   3'- -GCuuCGGgCUCUCGCGCaaCCAcuAG- -5'
23779 5' -55.4 NC_005261.1 + 49841 0.69 0.774487
Target:  5'- --cAGCaCCGAGGGCGUGaaGGUGAg- -3'
miRNA:   3'- gcuUCG-GGCUCUCGCGCaaCCACUag -5'
23779 5' -55.4 NC_005261.1 + 57377 0.69 0.774487
Target:  5'- cCGAcGCCCGccagcagcucggGGAGCGCGcccGUGAUCc -3'
miRNA:   3'- -GCUuCGGGC------------UCUCGCGCaacCACUAG- -5'
23779 5' -55.4 NC_005261.1 + 122641 0.7 0.74563
Target:  5'- gCGAGGCCCG-GcGCGCGUacGUGggCg -3'
miRNA:   3'- -GCUUCGGGCuCuCGCGCAacCACuaG- -5'
23779 5' -55.4 NC_005261.1 + 48302 0.7 0.71586
Target:  5'- gCGAGGCCUcgGGGGGCGCGUcGGgcccgGGcUCg -3'
miRNA:   3'- -GCUUCGGG--CUCUCGCGCAaCCa----CU-AG- -5'
23779 5' -55.4 NC_005261.1 + 33621 0.7 0.705778
Target:  5'- gCGggGCCCGGGGGCGCGc-------- -3'
miRNA:   3'- -GCuuCGGGCUCUCGCGCaaccacuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.