miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2378 3' -49.2 NC_001416.1 + 14670 1.14 0.001671
Target:  5'- cCGAAUCACGCCGCAAUUUACUGCGGCg -3'
miRNA:   3'- -GCUUAGUGCGGCGUUAAAUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 14748 0.73 0.652009
Target:  5'- ----cCGuCGCCGCAGUaaAUUGCGGCg -3'
miRNA:   3'- gcuuaGU-GCGGCGUUAaaUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 5035 0.72 0.675059
Target:  5'- -aAAUCACGCUG--AUUUACaGCGGCa -3'
miRNA:   3'- gcUUAGUGCGGCguUAAAUGaCGCCG- -5'
2378 3' -49.2 NC_001416.1 + 24144 0.71 0.751466
Target:  5'- ----aCACGUCGUAugcaggaacgUGCUGCGGCu -3'
miRNA:   3'- gcuuaGUGCGGCGUuaa-------AUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 366 0.69 0.86194
Target:  5'- aCGAAaagCuGCGCCGgGAgguugaagaACUGCGGCa -3'
miRNA:   3'- -GCUUa--G-UGCGGCgUUaaa------UGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 9870 0.69 0.844226
Target:  5'- gCGuuUCugGUgGCGAUguccCUGUGGCa -3'
miRNA:   3'- -GCuuAGugCGgCGUUAaau-GACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 14144 0.69 0.834059
Target:  5'- uGGcgCACGCCcgGCGAUgUGCgccagcggagucgUGCGGCu -3'
miRNA:   3'- gCUuaGUGCGG--CGUUAaAUG-------------ACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 20275 0.68 0.884162
Target:  5'- uGGuggC-CGCCGCGuUUUuugaggacucugcgGCUGCGGCa -3'
miRNA:   3'- gCUua-GuGCGGCGUuAAA--------------UGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 31987 0.68 0.867893
Target:  5'- cCGGuGUCAUGCUGCcaccuucugcuCUGCGGCu -3'
miRNA:   3'- -GCU-UAGUGCGGCGuuaaau-----GACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 3778 0.68 0.900016
Target:  5'- gCGuAUUACGCCGCAGcgccgguccgGCUGggaGGCg -3'
miRNA:   3'- -GCuUAGUGCGGCGUUaaa-------UGACg--CCG- -5'
2378 3' -49.2 NC_001416.1 + 5674 0.68 0.901458
Target:  5'- ----gCGCGCCuguGCAcucuGUggUGCUGCGGCc -3'
miRNA:   3'- gcuuaGUGCGG---CGU----UAa-AUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 21040 0.68 0.901458
Target:  5'- uGGAUCAUuCC-CGAgc-GCUGCGGCc -3'
miRNA:   3'- gCUUAGUGcGGcGUUaaaUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 5843 0.68 0.894128
Target:  5'- cCGggUCACuGuuGCc-----CUGCGGCu -3'
miRNA:   3'- -GCuuAGUG-CggCGuuaaauGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 5531 0.68 0.870404
Target:  5'- ---uUC-UGCCGCAAcc-GCUGCGGUg -3'
miRNA:   3'- gcuuAGuGCGGCGUUaaaUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 7884 0.68 0.878595
Target:  5'- ----cCACGCCGCA----GCUGCcGCa -3'
miRNA:   3'- gcuuaGUGCGGCGUuaaaUGACGcCG- -5'
2378 3' -49.2 NC_001416.1 + 28470 0.67 0.93359
Target:  5'- uGAG-CAuUGCCGCAAUUUcuuUUGUGGUg -3'
miRNA:   3'- gCUUaGU-GCGGCGUUAAAu--GACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 33419 0.67 0.915222
Target:  5'- aCGAAUCAC-CCGUAAaUUACgUGaCGGa -3'
miRNA:   3'- -GCUUAGUGcGGCGUUaAAUG-AC-GCCg -5'
2378 3' -49.2 NC_001416.1 + 16808 0.66 0.944311
Target:  5'- cCGGGggcaggCACaCCGCGccggGCUGUGGCu -3'
miRNA:   3'- -GCUUa-----GUGcGGCGUuaaaUGACGCCG- -5'
2378 3' -49.2 NC_001416.1 + 39184 0.66 0.944311
Target:  5'- -----gAUGCUGCAAUUcAgaGCGGCa -3'
miRNA:   3'- gcuuagUGCGGCGUUAAaUgaCGCCG- -5'
2378 3' -49.2 NC_001416.1 + 40057 0.66 0.953833
Target:  5'- gGAAUUACGCCGUAAg--GCcGCa-- -3'
miRNA:   3'- gCUUAGUGCGGCGUUaaaUGaCGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.