miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2378 5' -48.1 NC_001416.1 + 17181 0.66 0.967654
Target:  5'- -cGCUGCGCCAgcgacUGUuccgcugcgugaguaUCCgugaGAACGACg -3'
miRNA:   3'- gaCGACGUGGU-----AUA---------------AGGa---CUUGUUGa -5'
2378 5' -48.1 NC_001416.1 + 35072 0.66 0.966199
Target:  5'- uUGCUGUACCAUGUgCgCUGAuucuuGCg -3'
miRNA:   3'- gACGACGUGGUAUAaG-GACUugu--UGa -5'
2378 5' -48.1 NC_001416.1 + 20124 0.66 0.965078
Target:  5'- -aGUUGCAUCAg--UcacaagggccgcgaCCUGAGCAGCUg -3'
miRNA:   3'- gaCGACGUGGUauaA--------------GGACUUGUUGA- -5'
2378 5' -48.1 NC_001416.1 + 3690 0.66 0.962361
Target:  5'- uCUGCaGCugCGUGUUCU---GCAGCg -3'
miRNA:   3'- -GACGaCGugGUAUAAGGacuUGUUGa -5'
2378 5' -48.1 NC_001416.1 + 42333 0.66 0.95823
Target:  5'- aCUGCUGCGCagaa---CUGAugAGCg -3'
miRNA:   3'- -GACGACGUGguauaagGACUugUUGa -5'
2378 5' -48.1 NC_001416.1 + 41872 0.66 0.953799
Target:  5'- -aGCUcGUACCAUGU-CCUGAuACAggGCUu -3'
miRNA:   3'- gaCGA-CGUGGUAUAaGGACU-UGU--UGA- -5'
2378 5' -48.1 NC_001416.1 + 20201 0.66 0.953799
Target:  5'- gCUuCUGCGCCGgaggacgcUUCCUGAGCuGACg -3'
miRNA:   3'- -GAcGACGUGGUau------AAGGACUUG-UUGa -5'
2378 5' -48.1 NC_001416.1 + 12261 0.67 0.926953
Target:  5'- cCUGCUGCGCCAgcgcGUucaggcgcUCCUGAu--ACg -3'
miRNA:   3'- -GACGACGUGGUa---UA--------AGGACUuguUGa -5'
2378 5' -48.1 NC_001416.1 + 6571 0.67 0.920625
Target:  5'- aCUGcCUGCAUCucuucgaCCUGAGCAAUg -3'
miRNA:   3'- -GAC-GACGUGGuauaa--GGACUUGUUGa -5'
2378 5' -48.1 NC_001416.1 + 24192 0.7 0.830791
Target:  5'- uCUGCgGCucuACCAUAUcUCCUauGAGCAACg -3'
miRNA:   3'- -GACGaCG---UGGUAUA-AGGA--CUUGUUGa -5'
2378 5' -48.1 NC_001416.1 + 2625 0.76 0.468837
Target:  5'- uUGCUGCACCAUccucUUCCUGcaggcucgcAGCAGCg -3'
miRNA:   3'- gACGACGUGGUAu---AAGGAC---------UUGUUGa -5'
2378 5' -48.1 NC_001416.1 + 14705 1.09 0.003736
Target:  5'- gCUGCUGCACCAUAUUCCUGAACAACUg -3'
miRNA:   3'- -GACGACGUGGUAUAAGGACUUGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.