Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2378 | 5' | -48.1 | NC_001416.1 | + | 17181 | 0.66 | 0.967654 |
Target: 5'- -cGCUGCGCCAgcgacUGUuccgcugcgugaguaUCCgugaGAACGACg -3' miRNA: 3'- gaCGACGUGGU-----AUA---------------AGGa---CUUGUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 35072 | 0.66 | 0.966199 |
Target: 5'- uUGCUGUACCAUGUgCgCUGAuucuuGCg -3' miRNA: 3'- gACGACGUGGUAUAaG-GACUugu--UGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 20124 | 0.66 | 0.965078 |
Target: 5'- -aGUUGCAUCAg--UcacaagggccgcgaCCUGAGCAGCUg -3' miRNA: 3'- gaCGACGUGGUauaA--------------GGACUUGUUGA- -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 3690 | 0.66 | 0.962361 |
Target: 5'- uCUGCaGCugCGUGUUCU---GCAGCg -3' miRNA: 3'- -GACGaCGugGUAUAAGGacuUGUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 42333 | 0.66 | 0.95823 |
Target: 5'- aCUGCUGCGCagaa---CUGAugAGCg -3' miRNA: 3'- -GACGACGUGguauaagGACUugUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 41872 | 0.66 | 0.953799 |
Target: 5'- -aGCUcGUACCAUGU-CCUGAuACAggGCUu -3' miRNA: 3'- gaCGA-CGUGGUAUAaGGACU-UGU--UGA- -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 20201 | 0.66 | 0.953799 |
Target: 5'- gCUuCUGCGCCGgaggacgcUUCCUGAGCuGACg -3' miRNA: 3'- -GAcGACGUGGUau------AAGGACUUG-UUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 12261 | 0.67 | 0.926953 |
Target: 5'- cCUGCUGCGCCAgcgcGUucaggcgcUCCUGAu--ACg -3' miRNA: 3'- -GACGACGUGGUa---UA--------AGGACUuguUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 6571 | 0.67 | 0.920625 |
Target: 5'- aCUGcCUGCAUCucuucgaCCUGAGCAAUg -3' miRNA: 3'- -GAC-GACGUGGuauaa--GGACUUGUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 24192 | 0.7 | 0.830791 |
Target: 5'- uCUGCgGCucuACCAUAUcUCCUauGAGCAACg -3' miRNA: 3'- -GACGaCG---UGGUAUA-AGGA--CUUGUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 2625 | 0.76 | 0.468837 |
Target: 5'- uUGCUGCACCAUccucUUCCUGcaggcucgcAGCAGCg -3' miRNA: 3'- gACGACGUGGUAu---AAGGAC---------UUGUUGa -5' |
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2378 | 5' | -48.1 | NC_001416.1 | + | 14705 | 1.09 | 0.003736 |
Target: 5'- gCUGCUGCACCAUAUUCCUGAACAACUg -3' miRNA: 3'- -GACGACGUGGUAUAAGGACUUGUUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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