miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 88119 0.66 0.311741
Target:  5'- cCGGCUucuucaacccauUCCUCGCgCCgCGCGGG-GGCg -3'
miRNA:   3'- uGCCGG------------AGGGGCGgGG-GCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 84657 0.66 0.318381
Target:  5'- cCGGCUggcgcCgCCCGCgCCCGCGGccGCGcACa -3'
miRNA:   3'- uGCCGGa----G-GGGCGgGGGCGCC--CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 122373 0.66 0.298776
Target:  5'- cGCGGCC-CCaCCGCggCCUGgGGGCG-Cu -3'
miRNA:   3'- -UGCCGGaGG-GGCGg-GGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 14778 0.66 0.325128
Target:  5'- -gGGCCgCCCCGCgcaggugccgcUCCCGCaGGCuGCg -3'
miRNA:   3'- ugCCGGaGGGGCG-----------GGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 118189 0.66 0.318381
Target:  5'- -gGGCCgcgggCCCCGCgCCUGCcgcgcugcgcgGGGCG-Cu -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCG-----------CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 105464 0.66 0.305206
Target:  5'- cACGGCCgCCCUcaGCuCCUCG-GGGCGcGCg -3'
miRNA:   3'- -UGCCGGaGGGG--CG-GGGGCgCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 59766 0.66 0.296868
Target:  5'- -aGGCCUCCaugUGCUCggccgcagcgacggCgGCGGGCGGCa -3'
miRNA:   3'- ugCCGGAGGg--GCGGG--------------GgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 60919 0.66 0.318381
Target:  5'- cCGGcCCUCCaCgGCggcgaCCCGCGGGCcguGGCc -3'
miRNA:   3'- uGCC-GGAGG-GgCGg----GGGCGCCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 48745 0.66 0.298776
Target:  5'- -aGGCaCUgcgcguagUCgCGCCCCC-CGGGCGGCc -3'
miRNA:   3'- ugCCG-GA--------GGgGCGGGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 30877 0.66 0.305206
Target:  5'- -gGGCCgccggCCCUGCCgCCCGagcuCGGGCuggGGCc -3'
miRNA:   3'- ugCCGGa----GGGGCGG-GGGC----GCCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 71604 0.66 0.318381
Target:  5'- -aGGCC-CgCCGCCgcggCCCGggcgcgggccCGGGCGGCg -3'
miRNA:   3'- ugCCGGaGgGGCGG----GGGC----------GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 116531 0.66 0.325128
Target:  5'- -aGGCCcgccgCUCCGCgCCCGCGcGCGuCa -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 105168 0.66 0.33129
Target:  5'- gGCGGCgUCCacggggcCCGCCgCCGCc-GCGGCa -3'
miRNA:   3'- -UGCCGgAGG-------GGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 71983 0.66 0.303266
Target:  5'- cGCGGCaggugcgcagcgucgCCCCugGCCUuaacgCCGgGGGCGACg -3'
miRNA:   3'- -UGCCGga-------------GGGG--CGGG-----GGCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 75560 0.66 0.311741
Target:  5'- cCGGCCaUCCCCGggg-CGCuGGGCGGCg -3'
miRNA:   3'- uGCCGG-AGGGGCggggGCG-CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 52526 0.66 0.298776
Target:  5'- gACGGCCgCCCgaaaCGCUUCC-CGGGcCGGCu -3'
miRNA:   3'- -UGCCGGaGGG----GCGGGGGcGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 118701 0.66 0.305206
Target:  5'- cGCGGCgUggUCCUGCUCagcguCGCGGGCGGg -3'
miRNA:   3'- -UGCCGgA--GGGGCGGGg----GCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 53113 0.66 0.311741
Target:  5'- cGCGGCgCUgCgCGCCgCCaacaGGGCGGCg -3'
miRNA:   3'- -UGCCG-GAgGgGCGGgGGcg--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 5606 0.66 0.305206
Target:  5'- -aGGCCcCCCCcucuaaCCCCUuugcuGCGGcGCGACg -3'
miRNA:   3'- ugCCGGaGGGGc-----GGGGG-----CGCC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.