miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 105168 0.66 0.33129
Target:  5'- gGCGGCgUCCacggggcCCGCCgCCGCc-GCGGCa -3'
miRNA:   3'- -UGCCGgAGG-------GGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 14778 0.66 0.325128
Target:  5'- -gGGCCgCCCCGCgcaggugccgcUCCCGCaGGCuGCg -3'
miRNA:   3'- ugCCGGaGGGGCG-----------GGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 94399 0.66 0.311082
Target:  5'- gGCGGCCUCCUCGacgaagggcgcgaCgUCCGCGGcGCcGCc -3'
miRNA:   3'- -UGCCGGAGGGGC-------------GgGGGCGCC-CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 118189 0.66 0.318381
Target:  5'- -gGGCCgcgggCCCCGCgCCUGCcgcgcugcgcgGGGCG-Cu -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCG-----------CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 69601 0.66 0.33198
Target:  5'- cACGGCCUUcgaccgcgcgCCCGCCgCCCGgCacGGCGuGCg -3'
miRNA:   3'- -UGCCGGAG----------GGGCGG-GGGC-Gc-CCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 107670 0.66 0.325128
Target:  5'- cGCGGCC-CCgccgggcguugCCGCCgCgGCGGG-GGCg -3'
miRNA:   3'- -UGCCGGaGG-----------GGCGGgGgCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 108594 0.66 0.311741
Target:  5'- uUGGCCUCgCCCacgggcaccaGCgCCU-CGGGCGGCa -3'
miRNA:   3'- uGCCGGAG-GGG----------CGgGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 93701 0.66 0.33198
Target:  5'- gGCGGgugccucuuCCUCCUCGUCgUCGUcGGCGGCg -3'
miRNA:   3'- -UGCC---------GGAGGGGCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 106334 0.66 0.33198
Target:  5'- cACGGCC-CCgccgccgcguCCGCCCCCGCcgccGcGCuGACg -3'
miRNA:   3'- -UGCCGGaGG----------GGCGGGGGCGc---C-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 77702 0.66 0.33198
Target:  5'- gACGGCCcccucgaCCgCCGCCCCCcaGCcaaGCGGCg -3'
miRNA:   3'- -UGCCGGa------GG-GGCGGGGG--CGcc-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 120606 0.66 0.311741
Target:  5'- uGCGGCCUCggcgCCgugggGCUCCUGCuGGUGGCg -3'
miRNA:   3'- -UGCCGGAGg---GG-----CGGGGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 943 0.66 0.338237
Target:  5'- -gGGCCUCCCUcuccucccuccgaGCCCguagagCgGCGGGCcGCg -3'
miRNA:   3'- ugCCGGAGGGG-------------CGGG------GgCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 12338 0.66 0.338938
Target:  5'- uUGGCCggcgcggCCGCCgCCGCG-GCGGCa -3'
miRNA:   3'- uGCCGGagg----GGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 77149 0.66 0.338938
Target:  5'- cACcGUCUCgCgCCGCCgCCGCGaGGCGGg -3'
miRNA:   3'- -UGcCGGAG-G-GGCGGgGGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 116531 0.66 0.325128
Target:  5'- -aGGCCcgccgCUCCGCgCCCGCGcGCGuCa -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 53113 0.66 0.311741
Target:  5'- cGCGGCgCUgCgCGCCgCCaacaGGGCGGCg -3'
miRNA:   3'- -UGCCG-GAgGgGCGGgGGcg--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 72408 0.66 0.33198
Target:  5'- cCGcGCgUCCCCGCCCuuGCGcucGCcGCg -3'
miRNA:   3'- uGC-CGgAGGGGCGGGggCGCc--CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 64922 0.66 0.338938
Target:  5'- cGCGGCgugcuccugCUCgCCGCCCaggggCGCGuGCGGCa -3'
miRNA:   3'- -UGCCG---------GAGgGGCGGGg----GCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98301 0.67 0.274109
Target:  5'- cGCGGCCUCgggggcgggCgCCGCCgCCaGCG-GCGGCg -3'
miRNA:   3'- -UGCCGGAG---------G-GGCGGgGG-CGCcCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.