miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 95824 0.67 0.286233
Target:  5'- cGCGGuCCUCgCgGCgCuuGUGGGCGGa -3'
miRNA:   3'- -UGCC-GGAGgGgCGgGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 76536 0.67 0.2624
Target:  5'- gGCGGgUaCCUCGCCCUCuacgGCauGGGCGACg -3'
miRNA:   3'- -UGCCgGaGGGGCGGGGG----CG--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 53719 0.67 0.268203
Target:  5'- cGCGGCCagCUgcggCGCgCCCGCacGGGCGAg -3'
miRNA:   3'- -UGCCGGagGG----GCGgGGGCG--CCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 21808 0.67 0.268203
Target:  5'- cCGGCCgggCCggGCCCgCgGCGGGCGcGCg -3'
miRNA:   3'- uGCCGGa--GGggCGGG-GgCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 102279 0.67 0.268203
Target:  5'- uCGGCCUgCCgCGCCagcggCCGCGGGUc-- -3'
miRNA:   3'- uGCCGGAgGG-GCGGg----GGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 77251 0.67 0.2624
Target:  5'- cCGGgCUCaaaagggCGCgCUCGCGGGCGGCg -3'
miRNA:   3'- uGCCgGAGgg-----GCGgGGGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 115391 0.67 0.286233
Target:  5'- gUGGUCUUCagcgggUCGUCgaCCGCGGGCGGCa -3'
miRNA:   3'- uGCCGGAGG------GGCGGg-GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 108652 0.67 0.292452
Target:  5'- -aGGCCUCCgCCaGCCCCgGCGucGCGuCc -3'
miRNA:   3'- ugCCGGAGG-GG-CGGGGgCGCc-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 118041 0.67 0.286233
Target:  5'- cCGGCCgcgaCGCCCgCGCuGGCGGCc -3'
miRNA:   3'- uGCCGGagggGCGGGgGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98049 0.67 0.286233
Target:  5'- gGCGGCCgcgggCgGCgggaCCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGGagg--GgCGgg--GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 82531 0.67 0.286233
Target:  5'- uCGGCCccaUCCUCGCCCCCcuccucgcccGCGGccGCG-Cg -3'
miRNA:   3'- uGCCGG---AGGGGCGGGGG----------CGCC--CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 4879 0.67 0.292452
Target:  5'- gACGGCCgCCucagccgcggCCGCCUCgGCuucGGCGGCg -3'
miRNA:   3'- -UGCCGGaGG----------GGCGGGGgCGc--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 104202 0.67 0.286233
Target:  5'- gACGGCgUCCaggCGCUCgCGCGcGGCGcGCa -3'
miRNA:   3'- -UGCCGgAGGg--GCGGGgGCGC-CCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 17548 0.67 0.285617
Target:  5'- gGCGGCgCgggCCCGCcguucggcgguggCCuuGCGGGCGAg -3'
miRNA:   3'- -UGCCG-Gag-GGGCG-------------GGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 107184 0.67 0.286233
Target:  5'- gGCGGCguagCCCUGCagCCGCGcgaaGGCGGCg -3'
miRNA:   3'- -UGCCGga--GGGGCGggGGCGC----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 106569 0.67 0.286233
Target:  5'- cGCGcGCCggCCCCgggGCCgCCGCGcGGCG-Cu -3'
miRNA:   3'- -UGC-CGGa-GGGG---CGGgGGCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 50721 0.67 0.286233
Target:  5'- aACGcGCCUCCUCGCCCUCGUcGcCGcACg -3'
miRNA:   3'- -UGC-CGGAGGGGCGGGGGCGcCcGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 66658 0.67 0.292452
Target:  5'- gGCcGCCUCCuCCGCgagcagCCCCaGCGccucGGCGGCg -3'
miRNA:   3'- -UGcCGGAGG-GGCG------GGGG-CGC----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 71856 0.67 0.291826
Target:  5'- cUGGCgCUCgcgccgcuugcggUCCGCCCgCGCGGGC-ACg -3'
miRNA:   3'- uGCCG-GAG-------------GGGCGGGgGCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 77597 0.67 0.292452
Target:  5'- uACGGCUU-CCCGCCgCCG-GGGCu-- -3'
miRNA:   3'- -UGCCGGAgGGGCGGgGGCgCCCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.