Results 101 - 120 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 102279 | 0.67 | 0.268203 |
Target: 5'- uCGGCCUgCCgCGCCagcggCCGCGGGUc-- -3' miRNA: 3'- uGCCGGAgGG-GCGGg----GGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 94988 | 0.67 | 0.268203 |
Target: 5'- -aGGCCccgcgcgcgCCCCG-CCCUGCGgGGCGGg -3' miRNA: 3'- ugCCGGa--------GGGGCgGGGGCGC-CCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 86537 | 0.67 | 0.268203 |
Target: 5'- cGCGGgUUCCCgGCCacguaGgGGGCGGCg -3' miRNA: 3'- -UGCCgGAGGGgCGGggg--CgCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 70538 | 0.67 | 0.2624 |
Target: 5'- gGCGGCg-CCCgCGCCCcacccgCCGCaGGGCGcCg -3' miRNA: 3'- -UGCCGgaGGG-GCGGG------GGCG-CCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 106569 | 0.67 | 0.286233 |
Target: 5'- cGCGcGCCggCCCCgggGCCgCCGCGcGGCG-Cu -3' miRNA: 3'- -UGC-CGGa-GGGG---CGGgGGCGC-CCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 21616 | 0.67 | 0.2567 |
Target: 5'- cGCGaGCUucgggcgagggUCCCCGCCCCgGCGcGGaCGcCg -3' miRNA: 3'- -UGC-CGG-----------AGGGGCGGGGgCGC-CC-GCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 132701 | 0.67 | 0.255009 |
Target: 5'- gUGGCCgUgCCCGUCCCgGCGcccuaccucauugcGGCGGCc -3' miRNA: 3'- uGCCGG-AgGGGCGGGGgCGC--------------CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 30917 | 0.67 | 0.271734 |
Target: 5'- cCGGCCccUCCCggccgccggcgcaGCCCCuCGgGGGCGGg -3' miRNA: 3'- uGCCGG--AGGGg------------CGGGG-GCgCCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 89427 | 0.67 | 0.273514 |
Target: 5'- cGCGGCCgccgggcUCCCCGCgCCCGCcgugcuGGaGUuuGACa -3' miRNA: 3'- -UGCCGG-------AGGGGCGgGGGCG------CC-CG--CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 23606 | 0.67 | 0.274109 |
Target: 5'- gUGGCUgucgCCgCCGCUgCCGgGGcGCGGCg -3' miRNA: 3'- uGCCGGa---GG-GGCGGgGGCgCC-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 32718 | 0.67 | 0.276501 |
Target: 5'- --cGCC-CCCCGCCCCCgucuccguccgcucuGCGcGCGGCc -3' miRNA: 3'- ugcCGGaGGGGCGGGGG---------------CGCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 98301 | 0.67 | 0.274109 |
Target: 5'- cGCGGCCUCgggggcgggCgCCGCCgCCaGCG-GCGGCg -3' miRNA: 3'- -UGCCGGAG---------G-GGCGGgGG-CGCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 81817 | 0.67 | 0.274109 |
Target: 5'- cGCGGCggugacgCCCCGCgCCgCGCGGauGCGAa -3' miRNA: 3'- -UGCCGga-----GGGGCGgGG-GCGCC--CGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 131407 | 0.67 | 0.274109 |
Target: 5'- cCGaGCC-CCCCGCCgCUGCcGGcaGCGGCg -3' miRNA: 3'- uGC-CGGaGGGGCGGgGGCG-CC--CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 129306 | 0.67 | 0.274109 |
Target: 5'- cCGGCg-CCCCGCgCCUGCGcuGGCGcCg -3' miRNA: 3'- uGCCGgaGGGGCGgGGGCGC--CCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 72881 | 0.67 | 0.274109 |
Target: 5'- -aGGUCcgCCCCGCCgCCGgGGuagagcucGCGGCa -3' miRNA: 3'- ugCCGGa-GGGGCGGgGGCgCC--------CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 31654 | 0.67 | 0.274109 |
Target: 5'- cGCGGUCgaguacCUCUGCCUgcggcuggCCGCGGcGCGGCg -3' miRNA: 3'- -UGCCGGa-----GGGGCGGG--------GGCGCC-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 27281 | 0.67 | 0.274109 |
Target: 5'- cCGGCCcCCggaCCGCCCUCGCGaGCaGGCc -3' miRNA: 3'- uGCCGGaGG---GGCGGGGGCGCcCG-CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 22756 | 0.67 | 0.274109 |
Target: 5'- gGCGGCggCCCaCGCgUCUGgGGGCGGg -3' miRNA: 3'- -UGCCGgaGGG-GCGgGGGCgCCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 15479 | 0.67 | 0.274109 |
Target: 5'- cGCGGCggacacgCgCCGCUCgCUGCGGGCGGg -3' miRNA: 3'- -UGCCGga-----GgGGCGGG-GGCGCCCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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