miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 95824 0.67 0.286233
Target:  5'- cGCGGuCCUCgCgGCgCuuGUGGGCGGa -3'
miRNA:   3'- -UGCC-GGAGgGgCGgGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 98049 0.67 0.286233
Target:  5'- gGCGGCCgcgggCgGCgggaCCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGGagg--GgCGgg--GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 106569 0.67 0.286233
Target:  5'- cGCGcGCCggCCCCgggGCCgCCGCGcGGCG-Cu -3'
miRNA:   3'- -UGC-CGGa-GGGG---CGGgGGCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 107184 0.67 0.286233
Target:  5'- gGCGGCguagCCCUGCagCCGCGcgaaGGCGGCg -3'
miRNA:   3'- -UGCCGga--GGGGCGggGGCGC----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 118041 0.67 0.286233
Target:  5'- cCGGCCgcgaCGCCCgCGCuGGCGGCc -3'
miRNA:   3'- uGCCGGagggGCGGGgGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 71856 0.67 0.291826
Target:  5'- cUGGCgCUCgcgccgcuugcggUCCGCCCgCGCGGGC-ACg -3'
miRNA:   3'- uGCCG-GAG-------------GGGCGGGgGCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 107340 0.67 0.285617
Target:  5'- cACGGCCUCCgCGUugcggaccugcguCgUCGUGGGCGcCg -3'
miRNA:   3'- -UGCCGGAGGgGCG-------------GgGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 17548 0.67 0.285617
Target:  5'- gGCGGCgCgggCCCGCcguucggcgguggCCuuGCGGGCGAg -3'
miRNA:   3'- -UGCCG-Gag-GGGCG-------------GGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 118073 0.67 0.280119
Target:  5'- aGCGGCCgcagCCgCGCUcgUCUGCuGGCGGCc -3'
miRNA:   3'- -UGCCGGa---GGgGCGG--GGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 131407 0.67 0.274109
Target:  5'- cCGaGCC-CCCCGCCgCUGCcGGcaGCGGCg -3'
miRNA:   3'- uGC-CGGaGGGGCGGgGGCG-CC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 81817 0.67 0.274109
Target:  5'- cGCGGCggugacgCCCCGCgCCgCGCGGauGCGAa -3'
miRNA:   3'- -UGCCGga-----GGGGCGgGG-GCGCC--CGCUg -5'
23780 3' -69.5 NC_005261.1 + 132701 0.67 0.255009
Target:  5'- gUGGCCgUgCCCGUCCCgGCGcccuaccucauugcGGCGGCc -3'
miRNA:   3'- uGCCGG-AgGGGCGGGGgCGC--------------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98301 0.67 0.274109
Target:  5'- cGCGGCCUCgggggcgggCgCCGCCgCCaGCG-GCGGCg -3'
miRNA:   3'- -UGCCGGAG---------G-GGCGGgGG-CGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 32718 0.67 0.276501
Target:  5'- --cGCC-CCCCGCCCCCgucuccguccgcucuGCGcGCGGCc -3'
miRNA:   3'- ugcCGGaGGGGCGGGGG---------------CGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 37860 0.67 0.280119
Target:  5'- uCGGCgUCCCCGaCgCCUgGCGGcGCGuGCu -3'
miRNA:   3'- uGCCGgAGGGGC-G-GGGgCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 22814 0.67 0.280119
Target:  5'- gGCGGCgCUgCCgCCGCCgCCGuuGGCGcCg -3'
miRNA:   3'- -UGCCG-GA-GG-GGCGGgGGCgcCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 39773 0.67 0.280119
Target:  5'- gAUGGCCUCgaggaCGUCgCCgGgGGGCGGCg -3'
miRNA:   3'- -UGCCGGAGgg---GCGG-GGgCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102774 0.68 0.245603
Target:  5'- aGCGcGCCcgaggCCUCGCCCcggCCGCGaGcGCGGCg -3'
miRNA:   3'- -UGC-CGGa----GGGGCGGG---GGCGC-C-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 93917 0.68 0.245603
Target:  5'- cGCGGCg-CCCgcgggcuugCGCCgUCCGCGGGCGcCg -3'
miRNA:   3'- -UGCCGgaGGG---------GCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 133116 0.68 0.229708
Target:  5'- cGCGGCCUUCCaCGgcgugcgcgucUCCCUGCGGuGCGcGCu -3'
miRNA:   3'- -UGCCGGAGGG-GC-----------GGGGGCGCC-CGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.