miRNA display CGI


Results 141 - 160 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 75862 0.68 0.229708
Target:  5'- gACGGCggCCCCGacggCgCCGUGGGCGcGCg -3'
miRNA:   3'- -UGCCGgaGGGGCg---GgGGCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 4841 0.68 0.229708
Target:  5'- gGCGGCgUCCgCGCCgCaGCcucaaGGGCGGCg -3'
miRNA:   3'- -UGCCGgAGGgGCGGgGgCG-----CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35677 0.68 0.229708
Target:  5'- cCGGCCgcaCCCCcgccggcgaGCCCCgGUGGGCcgggGGCu -3'
miRNA:   3'- uGCCGGa--GGGG---------CGGGGgCGCCCG----CUG- -5'
23780 3' -69.5 NC_005261.1 + 133116 0.68 0.229708
Target:  5'- cGCGGCCUUCCaCGgcgugcgcgucUCCCUGCGGuGCGcGCu -3'
miRNA:   3'- -UGCCGGAGGG-GC-----------GGGGGCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 74366 0.68 0.231258
Target:  5'- gGCGGCCgcguccgcCCCCGCCCCcguccccaucccaguCcccguuuucggccGCGGGCGGg -3'
miRNA:   3'- -UGCCGGa-------GGGGCGGGG---------------G-------------CGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 134329 0.68 0.234383
Target:  5'- cUGGUCUCgCUgcuguaccgcaaGCCCCCGCgccgccgcgcgggGGGCGGCg -3'
miRNA:   3'- uGCCGGAGgGG------------CGGGGGCG-------------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 1073 0.68 0.234908
Target:  5'- -gGGCUggCCCCGCUCCa--GGGCGAg -3'
miRNA:   3'- ugCCGGa-GGGGCGGGGgcgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 105098 0.68 0.234908
Target:  5'- cCGGaCCUUCCgcgggggcuUGCCCgCGCGGGCG-Cg -3'
miRNA:   3'- uGCC-GGAGGG---------GCGGGgGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 134459 0.68 0.240206
Target:  5'- -aGGCgCUCUaccuggCCGCCaUCGUGGGCGGCg -3'
miRNA:   3'- ugCCG-GAGG------GGCGGgGGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 131462 0.68 0.251101
Target:  5'- cGCGGgCgccUCCCGCCUCCGCGaGCG-Cg -3'
miRNA:   3'- -UGCCgGa--GGGGCGGGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 103537 0.68 0.245603
Target:  5'- cGCcGCCUCCUCGgCCCC-CGGGCc-- -3'
miRNA:   3'- -UGcCGGAGGGGCgGGGGcGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 98454 0.68 0.251101
Target:  5'- gGCGGCg--CCCGCaaaaUCCGaCGGGCGGCc -3'
miRNA:   3'- -UGCCGgagGGGCGg---GGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 62066 0.68 0.251101
Target:  5'- aGCaGCUgCCCCGCCUCgCGCGaGGCG-Cu -3'
miRNA:   3'- -UGcCGGaGGGGCGGGG-GCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 118526 0.68 0.251101
Target:  5'- gGCGcCCUgCCCCGCcgacCCCUGCGGcGCGcGCg -3'
miRNA:   3'- -UGCcGGA-GGGGCG----GGGGCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 98142 0.68 0.251101
Target:  5'- gGCGGCCgUCggCGgCaaggCCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGG-AGggGCgGg---GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102774 0.68 0.245603
Target:  5'- aGCGcGCCcgaggCCUCGCCCcggCCGCGaGcGCGGCg -3'
miRNA:   3'- -UGC-CGGa----GGGGCGGG---GGCGC-C-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 17333 0.68 0.245603
Target:  5'- cCGGCCcagCuCCCGCCCCgCcCGGGCa-- -3'
miRNA:   3'- uGCCGGa--G-GGGCGGGG-GcGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 82809 0.68 0.242353
Target:  5'- cGCGGCCaccugcagccggugCCgCGCUCCCGCGcGGCa-- -3'
miRNA:   3'- -UGCCGGa-------------GGgGCGGGGGCGC-CCGcug -5'
23780 3' -69.5 NC_005261.1 + 39606 0.68 0.240206
Target:  5'- cGCGcGCCcCCgCCGCCCCCGuCGcGCaGACc -3'
miRNA:   3'- -UGC-CGGaGG-GGCGGGGGC-GCcCG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 104443 0.68 0.240206
Target:  5'- -gGGCCcgCgUCGCCgCCGCcGGCGGCg -3'
miRNA:   3'- ugCCGGa-GgGGCGGgGGCGcCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.