miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 33270 0.74 0.091615
Target:  5'- cGCGGCCcccgUCCCCGUCCcgguCCGUGGGCa-- -3'
miRNA:   3'- -UGCCGG----AGGGGCGGG----GGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 39542 0.74 0.087245
Target:  5'- cGCGGCCgccagCCCCGCgCgCGCGcGGCGGu -3'
miRNA:   3'- -UGCCGGa----GGGGCGgGgGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 39417 0.74 0.085134
Target:  5'- aGCGGCCaCCCCGUCCCC-CGGcGCGuCc -3'
miRNA:   3'- -UGCCGGaGGGGCGGGGGcGCC-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 37724 0.74 0.083073
Target:  5'- uCGGCCcgccggagccCCCCGucgcCCCCCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGa---------GGGGC----GGGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 2768 0.74 0.083073
Target:  5'- -gGGCCUCgaggCCCGCCCCCGagGGGCuGCc -3'
miRNA:   3'- ugCCGGAG----GGGCGGGGGCg-CCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 97390 0.74 0.081059
Target:  5'- cGCGGCUUUCgCGCCUgCCGCGGGCuuGGCg -3'
miRNA:   3'- -UGCCGGAGGgGCGGG-GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 130197 0.73 0.111255
Target:  5'- gACGGCCaCCaCCGCCuCCUGCaGGCGGa -3'
miRNA:   3'- -UGCCGGaGG-GGCGG-GGGCGcCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 32395 0.73 0.111255
Target:  5'- gGCGGCgUCCCggagcgcgUGCCgCCGCcGGCGACg -3'
miRNA:   3'- -UGCCGgAGGG--------GCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 119690 0.73 0.111255
Target:  5'- uCGGCaggUCCCGCUCCaCGCGcGGCGAUg -3'
miRNA:   3'- uGCCGga-GGGGCGGGG-GCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 100723 0.73 0.1086
Target:  5'- cGCGGCCgcgCCgCGCgCgCGCGcGGCGGCg -3'
miRNA:   3'- -UGCCGGa--GGgGCGgGgGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 127314 0.73 0.1086
Target:  5'- gGCGGUggggCCCUGCCgCCCGCGGG-GGCc -3'
miRNA:   3'- -UGCCGga--GGGGCGG-GGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 62221 0.73 0.106004
Target:  5'- cGCGGCCgcgUCUgCGCCCUCGCGGuGCuGCa -3'
miRNA:   3'- -UGCCGG---AGGgGCGGGGGCGCC-CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 2397 0.73 0.103466
Target:  5'- gGCGGCgagcgCgCCCGCgggCCCCGCGcGGCGGCg -3'
miRNA:   3'- -UGCCGga---G-GGGCG---GGGGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 106257 0.73 0.103466
Target:  5'- -gGGCCgccgCCgCCGCUgCCGcCGGGCGGCc -3'
miRNA:   3'- ugCCGGa---GG-GGCGGgGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 104155 0.73 0.100986
Target:  5'- uCGGCCaCCgCGCCgUCCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGaGGgGCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 48615 0.73 0.098802
Target:  5'- cGCGGCCgcgcccagccccacgCCCCGCCCCUGCGccGGCc-- -3'
miRNA:   3'- -UGCCGGa--------------GGGGCGGGGGCGC--CCGcug -5'
23780 3' -69.5 NC_005261.1 + 63001 0.72 0.113971
Target:  5'- cCGGCCcucggcggCCgCGCCCgCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGa-------GGgGCGGGgGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 11018 0.72 0.113971
Target:  5'- gACGGCCUCgucgccgggCCCGuCCCCCGgcggcacuCGGGCGcCg -3'
miRNA:   3'- -UGCCGGAG---------GGGC-GGGGGC--------GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 33780 0.72 0.113971
Target:  5'- cGCGGCgagCgCUggGCCCCgCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGga-GgGG--CGGGG-GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 132076 0.72 0.113971
Target:  5'- cGCGGCCgccgUCgCCGCUgCCGCggaGGGCGGCc -3'
miRNA:   3'- -UGCCGG----AGgGGCGGgGGCG---CCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.