miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 28201 0.71 0.134784
Target:  5'- gGCGGCCUCgCCGCCgCUGCc-GCGGCc -3'
miRNA:   3'- -UGCCGGAGgGGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 135226 0.71 0.134784
Target:  5'- cACGGCCgagcgcgucgCCgCCGUCUuuGCGGGCGcGCg -3'
miRNA:   3'- -UGCCGGa---------GG-GGCGGGggCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 128187 0.71 0.14001
Target:  5'- uGCGGUCUugcgguugcucaaCCCCGCCCCCGCaccgcuuucuuauuGGGCc-- -3'
miRNA:   3'- -UGCCGGA-------------GGGGCGGGGGCG--------------CCCGcug -5'
23780 3' -69.5 NC_005261.1 + 2259 0.71 0.141345
Target:  5'- -aGGCCgccggCgCUCGUCCUCGcCGGGCGGCg -3'
miRNA:   3'- ugCCGGa----G-GGGCGGGGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 33868 0.71 0.141345
Target:  5'- -gGGCC-CCCCGCCgCCCGCcuccGGCG-Cg -3'
miRNA:   3'- ugCCGGaGGGGCGG-GGGCGc---CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 103396 0.7 0.166667
Target:  5'- cGCGGCCgccugcgCCuCCaGCUCCgCGCGGGCcGCg -3'
miRNA:   3'- -UGCCGGa------GG-GG-CGGGG-GCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 133771 0.7 0.166667
Target:  5'- cCGuGCCUCCaCGCCCUCGUGcGGCG-Ca -3'
miRNA:   3'- uGC-CGGAGGgGCGGGGGCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 122294 0.7 0.166667
Target:  5'- cGCGGC---CCCGCUgCCGCaGGCGACg -3'
miRNA:   3'- -UGCCGgagGGGCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35920 0.7 0.166667
Target:  5'- cGCGGCC-CCgCGCCgcagCCCaGCGGGCGcCc -3'
miRNA:   3'- -UGCCGGaGGgGCGG----GGG-CGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 103968 0.7 0.168231
Target:  5'- gGCGGCCgccacacggaagcgcUCgCCGCCgCCGCGGuCGGCc -3'
miRNA:   3'- -UGCCGG---------------AGgGGCGGgGGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 50615 0.7 0.170204
Target:  5'- -gGGCg-CCCCgauugguGCUCCaCGCGGGCGGCg -3'
miRNA:   3'- ugCCGgaGGGG-------CGGGG-GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 88342 0.7 0.166667
Target:  5'- gGCGGCg-CCCCGCCgCCGC-GGCGuucACa -3'
miRNA:   3'- -UGCCGgaGGGGCGGgGGCGcCCGC---UG- -5'
23780 3' -69.5 NC_005261.1 + 93812 0.7 0.162815
Target:  5'- cGCGcGCCgccgCCaCCGCCgcagCCGcCGGGCGGCg -3'
miRNA:   3'- -UGC-CGGa---GG-GGCGGg---GGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 32165 0.7 0.162815
Target:  5'- uGCGGCCgguguaCCUGgC-CUGCGGGCGGCg -3'
miRNA:   3'- -UGCCGGag----GGGCgGgGGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35429 0.7 0.162815
Target:  5'- gACGGCagaagCgCCCGCccgCCCCGCGGGUcuaGGCg -3'
miRNA:   3'- -UGCCGga---G-GGGCG---GGGGCGCCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 68014 0.7 0.162815
Target:  5'- -gGGUCUCCUucuaCGUCCCCGCcgcGGGgGACg -3'
miRNA:   3'- ugCCGGAGGG----GCGGGGGCG---CCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 124898 0.7 0.159043
Target:  5'- cUGGCCgcCCCCGCCgCCaCGCGGGaaGCc -3'
miRNA:   3'- uGCCGGa-GGGGCGG-GG-GCGCCCgcUG- -5'
23780 3' -69.5 NC_005261.1 + 100207 0.7 0.159043
Target:  5'- gGCGGCCagcagCCCCGCguagagcucggCCaCCGcCGGGCGcACg -3'
miRNA:   3'- -UGCCGGa----GGGGCG-----------GG-GGC-GCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 95742 0.7 0.159043
Target:  5'- aGCGGCgCcgCCgCCGCCgCCGgGGGCGcCg -3'
miRNA:   3'- -UGCCG-Ga-GG-GGCGGgGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 59711 0.7 0.170601
Target:  5'- -gGGCagaCCCGCCCgC-CGGGCGGCa -3'
miRNA:   3'- ugCCGgagGGGCGGGgGcGCCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.