Results 101 - 120 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 46261 | 0.69 | 0.195984 |
Target: 5'- gGCGGCCgcgaCCgUGUCCCCG-GGGCG-Cu -3' miRNA: 3'- -UGCCGGa---GGgGCGGGGGCgCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 98537 | 0.69 | 0.195984 |
Target: 5'- cCGGCCgguaggcugCgCCCGCgaaaUCCgGCGGGCGGCc -3' miRNA: 3'- uGCCGGa--------G-GGGCG----GGGgCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 123237 | 0.69 | 0.198697 |
Target: 5'- aGCGGCCgcccaggcgcgggCCCCGCCCaUCGCccGUGACg -3' miRNA: 3'- -UGCCGGa------------GGGGCGGG-GGCGccCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 11883 | 0.69 | 0.200065 |
Target: 5'- gGCGaGCCcgCCCgcacgcgCGCCCgCCGCGGGCccGGCc -3' miRNA: 3'- -UGC-CGGa-GGG-------GCGGG-GGCGCCCG--CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 116052 | 0.69 | 0.200065 |
Target: 5'- gAUGGCCUuggcgCCCCGCguggcgcgccgguCCCCGUGGaugccgcgguccGCGACg -3' miRNA: 3'- -UGCCGGA-----GGGGCG-------------GGGGCGCC------------CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 2814 | 0.69 | 0.200523 |
Target: 5'- -gGGCCgggcggCCCCaGCCCgaGCucGGGCGGCa -3' miRNA: 3'- ugCCGGa-----GGGG-CGGGggCG--CCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 29317 | 0.69 | 0.200523 |
Target: 5'- aGCGcGCCgCCgCCGCCCggCCGCGugcgcuucGGCGGCg -3' miRNA: 3'- -UGC-CGGaGG-GGCGGG--GGCGC--------CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 75990 | 0.69 | 0.202364 |
Target: 5'- cGCGGCCgCCCucgcgcuggaCGCCCuggcgccgcgcagcgCCGCGGGCGcCc -3' miRNA: 3'- -UGCCGGaGGG----------GCGGG---------------GGCGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 3000 | 0.69 | 0.191535 |
Target: 5'- gGCGGCCcggCgCCgggGCUCCCGCGGGCc-- -3' miRNA: 3'- -UGCCGGa--GgGG---CGGGGGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 36985 | 0.69 | 0.191535 |
Target: 5'- uGCGGgCUCCa-GCCggagCCCGCGGGCuGCg -3' miRNA: 3'- -UGCCgGAGGggCGG----GGGCGCCCGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 38133 | 0.69 | 0.186744 |
Target: 5'- cGCGGCCgugcagaagaacuUCCCCGggaCCCCGCGGccGCaGCa -3' miRNA: 3'- -UGCCGG-------------AGGGGCg--GGGGCGCC--CGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 9997 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCaCCCgcuUGCCaCCCGacCGGGCGGg -3' miRNA: 3'- -UGCCGGaGGG---GCGG-GGGC--GCCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 31107 | 0.69 | 0.187176 |
Target: 5'- cCGGCggCCCCGCCgCCGaCG-GCGGCu -3' miRNA: 3'- uGCCGgaGGGGCGGgGGC-GCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 43284 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCgCCU--UUCCCGCGGGgGGCg -3' miRNA: 3'- -UGCCGGaGGGgcGGGGGCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 72960 | 0.69 | 0.187176 |
Target: 5'- cCGGCUcgCgCCCGCCgCCGCGGGgGuCc -3' miRNA: 3'- uGCCGGa-G-GGGCGGgGGCGCCCgCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 91132 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCgaggccucagCCgUGCCgCCCGgcgaguggccCGGGCGGCa -3' miRNA: 3'- -UGCCGGa---------GGgGCGG-GGGC----------GCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 124231 | 0.69 | 0.187176 |
Target: 5'- aGCaGCCcaaCCGCCgCCGCGGGCaGGCg -3' miRNA: 3'- -UGcCGGaggGGCGGgGGCGCCCG-CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 36017 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCaaggcucuUCCCCGCCCCUaCcccGCGACc -3' miRNA: 3'- -UGCCGG--------AGGGGCGGGGGcGcc-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 105252 | 0.69 | 0.187176 |
Target: 5'- gGCGGCaUCCgCGCgacaggCUCgGCGGGCGGCa -3' miRNA: 3'- -UGCCGgAGGgGCG------GGGgCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 115452 | 0.69 | 0.205153 |
Target: 5'- cGCGGCCggacUCCuCCGCCUcggugucggUCGCGGGCucGGCc -3' miRNA: 3'- -UGCCGG----AGG-GGCGGG---------GGCGCCCG--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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