Results 121 - 140 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 9997 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCaCCCgcuUGCCaCCCGacCGGGCGGg -3' miRNA: 3'- -UGCCGGaGGG---GCGG-GGGC--GCCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 31107 | 0.69 | 0.187176 |
Target: 5'- cCGGCggCCCCGCCgCCGaCG-GCGGCu -3' miRNA: 3'- uGCCGgaGGGGCGGgGGC-GCcCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 43284 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCgCCU--UUCCCGCGGGgGGCg -3' miRNA: 3'- -UGCCGGaGGGgcGGGGGCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 72960 | 0.69 | 0.187176 |
Target: 5'- cCGGCUcgCgCCCGCCgCCGCGGGgGuCc -3' miRNA: 3'- uGCCGGa-G-GGGCGGgGGCGCCCgCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 91132 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCgaggccucagCCgUGCCgCCCGgcgaguggccCGGGCGGCa -3' miRNA: 3'- -UGCCGGa---------GGgGCGG-GGGC----------GCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 124231 | 0.69 | 0.187176 |
Target: 5'- aGCaGCCcaaCCGCCgCCGCGGGCaGGCg -3' miRNA: 3'- -UGcCGGaggGGCGGgGGCGCCCG-CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 36017 | 0.69 | 0.187176 |
Target: 5'- cGCGGCCaaggcucuUCCCCGCCCCUaCcccGCGACc -3' miRNA: 3'- -UGCCGG--------AGGGGCGGGGGcGcc-CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 105252 | 0.69 | 0.187176 |
Target: 5'- gGCGGCaUCCgCGCgacaggCUCgGCGGGCGGCa -3' miRNA: 3'- -UGCCGgAGGgGCG------GGGgCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 123237 | 0.69 | 0.198697 |
Target: 5'- aGCGGCCgcccaggcgcgggCCCCGCCCaUCGCccGUGACg -3' miRNA: 3'- -UGCCGGa------------GGGGCGGG-GGCGccCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 98537 | 0.69 | 0.195984 |
Target: 5'- cCGGCCgguaggcugCgCCCGCgaaaUCCgGCGGGCGGCc -3' miRNA: 3'- uGCCGGa--------G-GGGCG----GGGgCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 46261 | 0.69 | 0.195984 |
Target: 5'- gGCGGCCgcgaCCgUGUCCCCG-GGGCG-Cu -3' miRNA: 3'- -UGCCGGa---GGgGCGGGGGCgCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 44295 | 0.69 | 0.195984 |
Target: 5'- aGCGGCgggCCagggCCGCUgCCCGCGGGCGcCg -3' miRNA: 3'- -UGCCGga-GG----GGCGG-GGGCGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 10971 | 0.69 | 0.195984 |
Target: 5'- -gGGCCgCCCCGCCCCgCGCccgacuGGCG-Cu -3' miRNA: 3'- ugCCGGaGGGGCGGGG-GCGc-----CCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 3000 | 0.69 | 0.191535 |
Target: 5'- gGCGGCCcggCgCCgggGCUCCCGCGGGCc-- -3' miRNA: 3'- -UGCCGGa--GgGG---CGGGGGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 36985 | 0.69 | 0.191535 |
Target: 5'- uGCGGgCUCCa-GCCggagCCCGCGGGCuGCg -3' miRNA: 3'- -UGCCgGAGGggCGG----GGGCGCCCGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 4063 | 0.68 | 0.219601 |
Target: 5'- cGCGGCCauggcgUCCCCGa-CCgGCGGcaGCGGCg -3' miRNA: 3'- -UGCCGG------AGGGGCggGGgCGCC--CGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 28849 | 0.68 | 0.219601 |
Target: 5'- gGCGGCCgucguggCCgCCGCCCuugaggCUGCGGcGCgGACg -3' miRNA: 3'- -UGCCGGa------GG-GGCGGG------GGCGCC-CG-CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 39469 | 0.68 | 0.219601 |
Target: 5'- cGCGGCg-CCCCaacggGCCCgCCGCGGaCGAUg -3' miRNA: 3'- -UGCCGgaGGGG-----CGGG-GGCGCCcGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 51929 | 0.68 | 0.219601 |
Target: 5'- cGCGGCCUggUCCCGCUCgUCGCcGGCGcCa -3' miRNA: 3'- -UGCCGGA--GGGGCGGG-GGCGcCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 55555 | 0.68 | 0.219601 |
Target: 5'- -aGGCCccgCCCacgcccacguCGCCCCCGCaguccgcGGCGGCg -3' miRNA: 3'- ugCCGGa--GGG----------GCGGGGGCGc------CCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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