miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 24532 0.72 0.113971
Target:  5'- -aGGUgUCCCCGCCCaCGUaccuggccGGGCGGCg -3'
miRNA:   3'- ugCCGgAGGGGCGGGgGCG--------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 63538 0.72 0.11675
Target:  5'- cGCGGCCUgCCCGCgcgccgugCCCGCuGGcGCGGCc -3'
miRNA:   3'- -UGCCGGAgGGGCGg-------GGGCG-CC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 53419 0.72 0.122496
Target:  5'- uGCGcGCC-CCCCGCCguccgccagCCCGuCGGGCGuCg -3'
miRNA:   3'- -UGC-CGGaGGGGCGG---------GGGC-GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 109805 0.72 0.125467
Target:  5'- gACGGCCggCgCCGCUUCCGCcGcGGCGGCc -3'
miRNA:   3'- -UGCCGGa-GgGGCGGGGGCG-C-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 86880 0.72 0.125467
Target:  5'- gGCGGCCUuggCCgCGCCCugguCCGCGcGCGGCg -3'
miRNA:   3'- -UGCCGGA---GGgGCGGG----GGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 137779 0.72 0.128504
Target:  5'- gGCGcGCCcccgggCCCCGCCgCCCGCGccGGCGcCg -3'
miRNA:   3'- -UGC-CGGa-----GGGGCGG-GGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 96 0.72 0.128504
Target:  5'- gGCGcGCCcccgggCCCCGCCgCCCGCGccGGCGcCg -3'
miRNA:   3'- -UGC-CGGa-----GGGGCGG-GGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 109494 0.72 0.128504
Target:  5'- aAUGGCCggggCCCgCGCCCgCCGCGGGg--- -3'
miRNA:   3'- -UGCCGGa---GGG-GCGGG-GGCGCCCgcug -5'
23780 3' -69.5 NC_005261.1 + 12492 0.72 0.131609
Target:  5'- gUGGaCUCUCCaugGCCCCC-CGGGCGACc -3'
miRNA:   3'- uGCCgGAGGGG---CGGGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 19856 0.71 0.134784
Target:  5'- uCGGCUUCCUCGCgcgagaCCCCGCcGGCGGg -3'
miRNA:   3'- uGCCGGAGGGGCG------GGGGCGcCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 114996 0.71 0.134784
Target:  5'- cCGGCCgccgcggCCCCGgCCCCGCGGa-GGCc -3'
miRNA:   3'- uGCCGGa------GGGGCgGGGGCGCCcgCUG- -5'
23780 3' -69.5 NC_005261.1 + 28201 0.71 0.134784
Target:  5'- gGCGGCCUCgCCGCCgCUGCc-GCGGCc -3'
miRNA:   3'- -UGCCGGAGgGGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 135226 0.71 0.134784
Target:  5'- cACGGCCgagcgcgucgCCgCCGUCUuuGCGGGCGcGCg -3'
miRNA:   3'- -UGCCGGa---------GG-GGCGGGggCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 128187 0.71 0.14001
Target:  5'- uGCGGUCUugcgguugcucaaCCCCGCCCCCGCaccgcuuucuuauuGGGCc-- -3'
miRNA:   3'- -UGCCGGA-------------GGGGCGGGGGCG--------------CCCGcug -5'
23780 3' -69.5 NC_005261.1 + 119522 0.71 0.141345
Target:  5'- cGCGGCCccggUCCCCGCggccgagcaaggCCCCGCcgcgGGGCcGCa -3'
miRNA:   3'- -UGCCGG----AGGGGCG------------GGGGCG----CCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 33868 0.71 0.141345
Target:  5'- -gGGCC-CCCCGCCgCCCGCcuccGGCG-Cg -3'
miRNA:   3'- ugCCGGaGGGGCGG-GGGCGc---CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 2259 0.71 0.141345
Target:  5'- -aGGCCgccggCgCUCGUCCUCGcCGGGCGGCg -3'
miRNA:   3'- ugCCGGa----G-GGGCGGGGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 118617 0.71 0.144734
Target:  5'- uCGGCCguugCCCUGgCCgCCGCG-GCGGCg -3'
miRNA:   3'- uGCCGGa---GGGGCgGG-GGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35811 0.71 0.14715
Target:  5'- gACGGCCUggaCCCCGgCCCCGagaGcucggcgcagaaaaGGCGGCg -3'
miRNA:   3'- -UGCCGGA---GGGGCgGGGGCg--C--------------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 138221 0.71 0.148197
Target:  5'- gACGGCggCUCgGCCgCCGCGcGGUGACa -3'
miRNA:   3'- -UGCCGgaGGGgCGGgGGCGC-CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.