Results 61 - 80 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 47688 | 0.71 | 0.148197 |
Target: 5'- cACGGCCgCCCgCGgCgCCGCGucGGCGGCg -3' miRNA: 3'- -UGCCGGaGGG-GCgGgGGCGC--CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 138221 | 0.71 | 0.148197 |
Target: 5'- gACGGCggCUCgGCCgCCGCGcGGUGACa -3' miRNA: 3'- -UGCCGgaGGGgCGGgGGCGC-CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 550 | 0.71 | 0.148197 |
Target: 5'- gACGGCggCUCgGCCgCCGCGcGGUGACa -3' miRNA: 3'- -UGCCGgaGGGgCGGgGGCGC-CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 8430 | 0.71 | 0.15535 |
Target: 5'- cACGGCCacagaCCgCGCCCCCuCGcGGCGAa -3' miRNA: 3'- -UGCCGGa----GGgGCGGGGGcGC-CCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 74079 | 0.71 | 0.156818 |
Target: 5'- cGCGGCCcggcuugugcgcgaCCUCGCCCCCcCGGGCccgGACc -3' miRNA: 3'- -UGCCGGa-------------GGGGCGGGGGcGCCCG---CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 124898 | 0.7 | 0.159043 |
Target: 5'- cUGGCCgcCCCCGCCgCCaCGCGGGaaGCc -3' miRNA: 3'- uGCCGGa-GGGGCGG-GG-GCGCCCgcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 100207 | 0.7 | 0.159043 |
Target: 5'- gGCGGCCagcagCCCCGCguagagcucggCCaCCGcCGGGCGcACg -3' miRNA: 3'- -UGCCGGa----GGGGCG-----------GG-GGC-GCCCGC-UG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 95742 | 0.7 | 0.159043 |
Target: 5'- aGCGGCgCcgCCgCCGCCgCCGgGGGCGcCg -3' miRNA: 3'- -UGCCG-Ga-GG-GGCGGgGGCgCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 121415 | 0.7 | 0.159043 |
Target: 5'- gACGGCUg--CCGCCgCCGCuacgGGGCGGCg -3' miRNA: 3'- -UGCCGGaggGGCGGgGGCG----CCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 93812 | 0.7 | 0.162815 |
Target: 5'- cGCGcGCCgccgCCaCCGCCgcagCCGcCGGGCGGCg -3' miRNA: 3'- -UGC-CGGa---GG-GGCGGg---GGC-GCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 32165 | 0.7 | 0.162815 |
Target: 5'- uGCGGCCgguguaCCUGgC-CUGCGGGCGGCg -3' miRNA: 3'- -UGCCGGag----GGGCgGgGGCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 35429 | 0.7 | 0.162815 |
Target: 5'- gACGGCagaagCgCCCGCccgCCCCGCGGGUcuaGGCg -3' miRNA: 3'- -UGCCGga---G-GGGCG---GGGGCGCCCG---CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 68014 | 0.7 | 0.162815 |
Target: 5'- -gGGUCUCCUucuaCGUCCCCGCcgcGGGgGACg -3' miRNA: 3'- ugCCGGAGGG----GCGGGGGCG---CCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 35920 | 0.7 | 0.166667 |
Target: 5'- cGCGGCC-CCgCGCCgcagCCCaGCGGGCGcCc -3' miRNA: 3'- -UGCCGGaGGgGCGG----GGG-CGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 122294 | 0.7 | 0.166667 |
Target: 5'- cGCGGC---CCCGCUgCCGCaGGCGACg -3' miRNA: 3'- -UGCCGgagGGGCGGgGGCGcCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 133771 | 0.7 | 0.166667 |
Target: 5'- cCGuGCCUCCaCGCCCUCGUGcGGCG-Ca -3' miRNA: 3'- uGC-CGGAGGgGCGGGGGCGC-CCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 103396 | 0.7 | 0.166667 |
Target: 5'- cGCGGCCgccugcgCCuCCaGCUCCgCGCGGGCcGCg -3' miRNA: 3'- -UGCCGGa------GG-GG-CGGGG-GCGCCCGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 88342 | 0.7 | 0.166667 |
Target: 5'- gGCGGCg-CCCCGCCgCCGC-GGCGuucACa -3' miRNA: 3'- -UGCCGgaGGGGCGGgGGCGcCCGC---UG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 103968 | 0.7 | 0.168231 |
Target: 5'- gGCGGCCgccacacggaagcgcUCgCCGCCgCCGCGGuCGGCc -3' miRNA: 3'- -UGCCGG---------------AGgGGCGGgGGCGCCcGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 50615 | 0.7 | 0.170204 |
Target: 5'- -gGGCg-CCCCgauugguGCUCCaCGCGGGCGGCg -3' miRNA: 3'- ugCCGgaGGGG-------CGGGG-GCGCCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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