miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 134749 0.7 0.170601
Target:  5'- gACGGCa--CCCGCgaCCCGCG-GCGGCa -3'
miRNA:   3'- -UGCCGgagGGGCGg-GGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 115198 0.7 0.170601
Target:  5'- cACGGCCcagcgCCCgUGCgUCCGCGGcGCGAUc -3'
miRNA:   3'- -UGCCGGa----GGG-GCGgGGGCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 100899 0.7 0.170601
Target:  5'- cGCGGCCUCgCCgCGCaCCgCCGCGaGCGuCg -3'
miRNA:   3'- -UGCCGGAG-GG-GCG-GG-GGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 91454 0.7 0.170601
Target:  5'- cGCGGCacggCCCCGCCCgCGCcucccaGCGGCg -3'
miRNA:   3'- -UGCCGga--GGGGCGGGgGCGcc----CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 60264 0.7 0.170601
Target:  5'- gGCGGCCgugaagaggcgCCcgggguCCGCCCCCGCGGcccGCaGGCa -3'
miRNA:   3'- -UGCCGGa----------GG------GGCGGGGGCGCC---CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 77518 0.7 0.170601
Target:  5'- cGCcGCCgcgcCCCCGCCCCCGaugcCGGGCu-- -3'
miRNA:   3'- -UGcCGGa---GGGGCGGGGGC----GCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 59711 0.7 0.170601
Target:  5'- -gGGCagaCCCGCCCgC-CGGGCGGCa -3'
miRNA:   3'- ugCCGgagGGGCGGGgGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 5091 0.7 0.172197
Target:  5'- cGCGGCCaccaugcgccacagCUCCGCCagcucggCGCGGGCGGCc -3'
miRNA:   3'- -UGCCGGa-------------GGGGCGGgg-----GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 43147 0.7 0.174617
Target:  5'- cGCGGCCUgCgCGCCgCCgacauCGCGGcGCGAUa -3'
miRNA:   3'- -UGCCGGAgGgGCGG-GG-----GCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 32302 0.7 0.174617
Target:  5'- gGCGccGCCcCCgCCGCCgCCGCGGccGCGGCg -3'
miRNA:   3'- -UGC--CGGaGG-GGCGGgGGCGCC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 10509 0.7 0.178718
Target:  5'- cGCGGCCgCCgCUGCgggCCCCGCGGcGCG-Cu -3'
miRNA:   3'- -UGCCGGaGG-GGCG---GGGGCGCC-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 32532 0.7 0.178718
Target:  5'- cCGGCCccggCCCCGgCCgcggCGCGGGcCGGCg -3'
miRNA:   3'- uGCCGGa---GGGGCgGGg---GCGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 38626 0.7 0.178718
Target:  5'- cGCGGCCgagCCCGCCgCCGaCGGugacggugaaaGCGGCg -3'
miRNA:   3'- -UGCCGGag-GGGCGGgGGC-GCC-----------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 43860 0.7 0.178718
Target:  5'- cGCGGCCgCgUCGUCCUCgGCGGcGCGGCu -3'
miRNA:   3'- -UGCCGGaGgGGCGGGGG-CGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 44031 0.7 0.182903
Target:  5'- gGCGGCCgCCgCGCggcggCCGCGGGCGGg -3'
miRNA:   3'- -UGCCGGaGGgGCGgg---GGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 43419 0.7 0.182903
Target:  5'- gGCGGCCUCCgCCGCCggCGgGGaGCuGGCu -3'
miRNA:   3'- -UGCCGGAGG-GGCGGggGCgCC-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 69770 0.7 0.182903
Target:  5'- gGCGGCg-CCggggacugagCCGCUCCCGCGGcgcGCGGCg -3'
miRNA:   3'- -UGCCGgaGG----------GGCGGGGGCGCC---CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 29373 0.7 0.182903
Target:  5'- -gGGCCUCUgggaCUGCCCcgagauCCGCGaGGCGGCc -3'
miRNA:   3'- ugCCGGAGG----GGCGGG------GGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 111650 0.69 0.186744
Target:  5'- cGCcGCCUCCCaGCCcuCCCGCGccgcgguGGCGGCg -3'
miRNA:   3'- -UGcCGGAGGGgCGG--GGGCGC-------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 38133 0.69 0.186744
Target:  5'- cGCGGCCgugcagaagaacuUCCCCGggaCCCCGCGGccGCaGCa -3'
miRNA:   3'- -UGCCGG-------------AGGGGCg--GGGGCGCC--CGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.