miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 105252 0.69 0.187176
Target:  5'- gGCGGCaUCCgCGCgacaggCUCgGCGGGCGGCa -3'
miRNA:   3'- -UGCCGgAGGgGCG------GGGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 36017 0.69 0.187176
Target:  5'- cGCGGCCaaggcucuUCCCCGCCCCUaCcccGCGACc -3'
miRNA:   3'- -UGCCGG--------AGGGGCGGGGGcGcc-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 124231 0.69 0.187176
Target:  5'- aGCaGCCcaaCCGCCgCCGCGGGCaGGCg -3'
miRNA:   3'- -UGcCGGaggGGCGGgGGCGCCCG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 91132 0.69 0.187176
Target:  5'- cGCGGCCgaggccucagCCgUGCCgCCCGgcgaguggccCGGGCGGCa -3'
miRNA:   3'- -UGCCGGa---------GGgGCGG-GGGC----------GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 72960 0.69 0.187176
Target:  5'- cCGGCUcgCgCCCGCCgCCGCGGGgGuCc -3'
miRNA:   3'- uGCCGGa-G-GGGCGGgGGCGCCCgCuG- -5'
23780 3' -69.5 NC_005261.1 + 43284 0.69 0.187176
Target:  5'- cGCGGCCgCCU--UUCCCGCGGGgGGCg -3'
miRNA:   3'- -UGCCGGaGGGgcGGGGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 31107 0.69 0.187176
Target:  5'- cCGGCggCCCCGCCgCCGaCG-GCGGCu -3'
miRNA:   3'- uGCCGgaGGGGCGGgGGC-GCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 9997 0.69 0.187176
Target:  5'- cGCGGCCaCCCgcuUGCCaCCCGacCGGGCGGg -3'
miRNA:   3'- -UGCCGGaGGG---GCGG-GGGC--GCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 36985 0.69 0.191535
Target:  5'- uGCGGgCUCCa-GCCggagCCCGCGGGCuGCg -3'
miRNA:   3'- -UGCCgGAGGggCGG----GGGCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 3000 0.69 0.191535
Target:  5'- gGCGGCCcggCgCCgggGCUCCCGCGGGCc-- -3'
miRNA:   3'- -UGCCGGa--GgGG---CGGGGGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 98537 0.69 0.195984
Target:  5'- cCGGCCgguaggcugCgCCCGCgaaaUCCgGCGGGCGGCc -3'
miRNA:   3'- uGCCGGa--------G-GGGCG----GGGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 46261 0.69 0.195984
Target:  5'- gGCGGCCgcgaCCgUGUCCCCG-GGGCG-Cu -3'
miRNA:   3'- -UGCCGGa---GGgGCGGGGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 44295 0.69 0.195984
Target:  5'- aGCGGCgggCCagggCCGCUgCCCGCGGGCGcCg -3'
miRNA:   3'- -UGCCGga-GG----GGCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 10971 0.69 0.195984
Target:  5'- -gGGCCgCCCCGCCCCgCGCccgacuGGCG-Cu -3'
miRNA:   3'- ugCCGGaGGGGCGGGG-GCGc-----CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 123237 0.69 0.198697
Target:  5'- aGCGGCCgcccaggcgcgggCCCCGCCCaUCGCccGUGACg -3'
miRNA:   3'- -UGCCGGa------------GGGGCGGG-GGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 11883 0.69 0.200065
Target:  5'- gGCGaGCCcgCCCgcacgcgCGCCCgCCGCGGGCccGGCc -3'
miRNA:   3'- -UGC-CGGa-GGG-------GCGGG-GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 116052 0.69 0.200065
Target:  5'- gAUGGCCUuggcgCCCCGCguggcgcgccgguCCCCGUGGaugccgcgguccGCGACg -3'
miRNA:   3'- -UGCCGGA-----GGGGCG-------------GGGGCGCC------------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 2814 0.69 0.200523
Target:  5'- -gGGCCgggcggCCCCaGCCCgaGCucGGGCGGCa -3'
miRNA:   3'- ugCCGGa-----GGGG-CGGGggCG--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 29317 0.69 0.200523
Target:  5'- aGCGcGCCgCCgCCGCCCggCCGCGugcgcuucGGCGGCg -3'
miRNA:   3'- -UGC-CGGaGG-GGCGGG--GGCGC--------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 75990 0.69 0.202364
Target:  5'- cGCGGCCgCCCucgcgcuggaCGCCCuggcgccgcgcagcgCCGCGGGCGcCc -3'
miRNA:   3'- -UGCCGGaGGG----------GCGGG---------------GGCGCCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.