miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 115452 0.69 0.205153
Target:  5'- cGCGGCCggacUCCuCCGCCUcggugucggUCGCGGGCucGGCc -3'
miRNA:   3'- -UGCCGG----AGG-GGCGGG---------GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 60865 0.69 0.209399
Target:  5'- -gGGCCgagCCCgCGCCguguucaCCCGCGcGGCGGg -3'
miRNA:   3'- ugCCGGa--GGG-GCGG-------GGGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 47924 0.69 0.209875
Target:  5'- cGCGGCCgucacgUCCCGCgCgCCGCGcGCGAg -3'
miRNA:   3'- -UGCCGGa-----GGGGCGgG-GGCGCcCGCUg -5'
23780 3' -69.5 NC_005261.1 + 67286 0.69 0.209875
Target:  5'- aGCaGCCcCCCCGCCgCCGCGcGCG-Cg -3'
miRNA:   3'- -UGcCGGaGGGGCGGgGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 42243 0.69 0.209875
Target:  5'- cGCGcagcGCCUCgaaCUGCCCgCGCGaGGCGGCc -3'
miRNA:   3'- -UGC----CGGAGg--GGCGGGgGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 30162 0.69 0.209875
Target:  5'- aGCGGCg-CCgCGCCCgCCGCGcugcgcgccgaGGCGGCc -3'
miRNA:   3'- -UGCCGgaGGgGCGGG-GGCGC-----------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 29187 0.69 0.209875
Target:  5'- gGCGcCCUCgCCGCggcgCCCgCGCGGGCGcGCg -3'
miRNA:   3'- -UGCcGGAGgGGCG----GGG-GCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 132314 0.69 0.209875
Target:  5'- -aGGCg-CCCCauCCCCCGCGGG-GACc -3'
miRNA:   3'- ugCCGgaGGGGc-GGGGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 10239 0.69 0.209875
Target:  5'- -gGGCCcgcgCaCUCGCCgCCGCGGGCcuGGCg -3'
miRNA:   3'- ugCCGGa---G-GGGCGGgGGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 34423 0.69 0.213236
Target:  5'- cGCGGCCcgCgCCUGCCCCUGCugccgaacgcgccgGGGC-ACg -3'
miRNA:   3'- -UGCCGGa-G-GGGCGGGGGCG--------------CCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 53552 0.69 0.213236
Target:  5'- uCGGCCgcgCCgCgGCCCaggcgcacuagcggCCGCGGGcCGGCg -3'
miRNA:   3'- uGCCGGa--GG-GgCGGG--------------GGCGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 102590 0.69 0.21372
Target:  5'- gGCGGCCUCgCCCGCgCCuuCCGCGuccucgccgccaGCGGCc -3'
miRNA:   3'- -UGCCGGAG-GGGCG-GG--GGCGCc-----------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 4291 0.69 0.214691
Target:  5'- cACGGCCgcgggCCCCGCggCCgCCGCGuagcgcGCGGCc -3'
miRNA:   3'- -UGCCGGa----GGGGCG--GG-GGCGCc-----CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 78052 0.69 0.214691
Target:  5'- gUGGUCgcgggCCCgGCCCCCGCGccGGCccaGGCg -3'
miRNA:   3'- uGCCGGa----GGGgCGGGGGCGC--CCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 46998 0.69 0.216643
Target:  5'- cGCGcGCCgcgCCgCCGCgaugcggcgguccagCCCCGCGacGGCGGCg -3'
miRNA:   3'- -UGC-CGGa--GG-GGCG---------------GGGGCGC--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 4063 0.68 0.219601
Target:  5'- cGCGGCCauggcgUCCCCGa-CCgGCGGcaGCGGCg -3'
miRNA:   3'- -UGCCGG------AGGGGCggGGgCGCC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 28849 0.68 0.219601
Target:  5'- gGCGGCCgucguggCCgCCGCCCuugaggCUGCGGcGCgGACg -3'
miRNA:   3'- -UGCCGGa------GG-GGCGGG------GGCGCC-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 39469 0.68 0.219601
Target:  5'- cGCGGCg-CCCCaacggGCCCgCCGCGGaCGAUg -3'
miRNA:   3'- -UGCCGgaGGGG-----CGGG-GGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 51929 0.68 0.219601
Target:  5'- cGCGGCCUggUCCCGCUCgUCGCcGGCGcCa -3'
miRNA:   3'- -UGCCGGA--GGGGCGGG-GGCGcCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 55555 0.68 0.219601
Target:  5'- -aGGCCccgCCCacgcccacguCGCCCCCGCaguccgcGGCGGCg -3'
miRNA:   3'- ugCCGGa--GGG----------GCGGGGGCGc------CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.