miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 17548 0.67 0.285617
Target:  5'- gGCGGCgCgggCCCGCcguucggcgguggCCuuGCGGGCGAg -3'
miRNA:   3'- -UGCCG-Gag-GGGCG-------------GGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 118073 0.67 0.280119
Target:  5'- aGCGGCCgcagCCgCGCUcgUCUGCuGGCGGCc -3'
miRNA:   3'- -UGCCGGa---GGgGCGG--GGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 39773 0.67 0.280119
Target:  5'- gAUGGCCUCgaggaCGUCgCCgGgGGGCGGCg -3'
miRNA:   3'- -UGCCGGAGgg---GCGG-GGgCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 22814 0.67 0.280119
Target:  5'- gGCGGCgCUgCCgCCGCCgCCGuuGGCGcCg -3'
miRNA:   3'- -UGCCG-GA-GG-GGCGGgGGCgcCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 37860 0.67 0.280119
Target:  5'- uCGGCgUCCCCGaCgCCUgGCGGcGCGuGCu -3'
miRNA:   3'- uGCCGgAGGGGC-G-GGGgCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 32718 0.67 0.276501
Target:  5'- --cGCC-CCCCGCCCCCgucuccguccgcucuGCGcGCGGCc -3'
miRNA:   3'- ugcCGGaGGGGCGGGGG---------------CGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 23606 0.67 0.274109
Target:  5'- gUGGCUgucgCCgCCGCUgCCGgGGcGCGGCg -3'
miRNA:   3'- uGCCGGa---GG-GGCGGgGGCgCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 15479 0.67 0.274109
Target:  5'- cGCGGCggacacgCgCCGCUCgCUGCGGGCGGg -3'
miRNA:   3'- -UGCCGga-----GgGGCGGG-GGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 22756 0.67 0.274109
Target:  5'- gGCGGCggCCCaCGCgUCUGgGGGCGGg -3'
miRNA:   3'- -UGCCGgaGGG-GCGgGGGCgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 131407 0.67 0.274109
Target:  5'- cCGaGCC-CCCCGCCgCUGCcGGcaGCGGCg -3'
miRNA:   3'- uGC-CGGaGGGGCGGgGGCG-CC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 27281 0.67 0.274109
Target:  5'- cCGGCCcCCggaCCGCCCUCGCGaGCaGGCc -3'
miRNA:   3'- uGCCGGaGG---GGCGGGGGCGCcCG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 31654 0.67 0.274109
Target:  5'- cGCGGUCgaguacCUCUGCCUgcggcuggCCGCGGcGCGGCg -3'
miRNA:   3'- -UGCCGGa-----GGGGCGGG--------GGCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 100058 0.67 0.274109
Target:  5'- aGCGcGCCg--CCGCCgCCCGgGGGCG-Cg -3'
miRNA:   3'- -UGC-CGGaggGGCGG-GGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 98301 0.67 0.274109
Target:  5'- cGCGGCCUCgggggcgggCgCCGCCgCCaGCG-GCGGCg -3'
miRNA:   3'- -UGCCGGAG---------G-GGCGGgGG-CGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 81817 0.67 0.274109
Target:  5'- cGCGGCggugacgCCCCGCgCCgCGCGGauGCGAa -3'
miRNA:   3'- -UGCCGga-----GGGGCGgGG-GCGCC--CGCUg -5'
23780 3' -69.5 NC_005261.1 + 129306 0.67 0.274109
Target:  5'- cCGGCg-CCCCGCgCCUGCGcuGGCGcCg -3'
miRNA:   3'- uGCCGgaGGGGCGgGGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 72881 0.67 0.274109
Target:  5'- -aGGUCcgCCCCGCCgCCGgGGuagagcucGCGGCa -3'
miRNA:   3'- ugCCGGa-GGGGCGGgGGCgCC--------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 89427 0.67 0.273514
Target:  5'- cGCGGCCgccgggcUCCCCGCgCCCGCcgugcuGGaGUuuGACa -3'
miRNA:   3'- -UGCCGG-------AGGGGCGgGGGCG------CC-CG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 30917 0.67 0.271734
Target:  5'- cCGGCCccUCCCggccgccggcgcaGCCCCuCGgGGGCGGg -3'
miRNA:   3'- uGCCGG--AGGGg------------CGGGG-GCgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 77930 0.67 0.270553
Target:  5'- -gGGCCggcuaccccuacggCCCCGCCUUCGCGGccGCGcaGCa -3'
miRNA:   3'- ugCCGGa-------------GGGGCGGGGGCGCC--CGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.