miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 4879 0.67 0.292452
Target:  5'- gACGGCCgCCucagccgcggCCGCCUCgGCuucGGCGGCg -3'
miRNA:   3'- -UGCCGGaGG----------GGCGGGGgCGc--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 5091 0.7 0.172197
Target:  5'- cGCGGCCaccaugcgccacagCUCCGCCagcucggCGCGGGCGGCc -3'
miRNA:   3'- -UGCCGGa-------------GGGGCGGgg-----GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 5606 0.66 0.305206
Target:  5'- -aGGCCcCCCCcucuaaCCCCUuugcuGCGGcGCGACg -3'
miRNA:   3'- ugCCGGaGGGGc-----GGGGG-----CGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 6250 0.8 0.033051
Target:  5'- -gGGCCUgCCCGCCCCgCG-GGGCGGCc -3'
miRNA:   3'- ugCCGGAgGGGCGGGG-GCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 8430 0.71 0.15535
Target:  5'- cACGGCCacagaCCgCGCCCCCuCGcGGCGAa -3'
miRNA:   3'- -UGCCGGa----GGgGCGGGGGcGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 9430 0.66 0.305206
Target:  5'- cUGGCC-CCCCaCCCCCaccCGGGCa-- -3'
miRNA:   3'- uGCCGGaGGGGcGGGGGc--GCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 9765 0.66 0.325128
Target:  5'- cGCGuGCCgacgaCCCCGaaaCCCgCCGCGaGGUGAg -3'
miRNA:   3'- -UGC-CGGa----GGGGC---GGG-GGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 9997 0.69 0.187176
Target:  5'- cGCGGCCaCCCgcuUGCCaCCCGacCGGGCGGg -3'
miRNA:   3'- -UGCCGGaGGG---GCGG-GGGC--GCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 10150 0.68 0.224606
Target:  5'- cACGGCCagCCCUGCCCCaccu-GCGACg -3'
miRNA:   3'- -UGCCGGa-GGGGCGGGGgcgccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 10239 0.69 0.209875
Target:  5'- -gGGCCcgcgCaCUCGCCgCCGCGGGCcuGGCg -3'
miRNA:   3'- ugCCGGa---G-GGGCGGgGGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 10509 0.7 0.178718
Target:  5'- cGCGGCCgCCgCUGCgggCCCCGCGGcGCG-Cu -3'
miRNA:   3'- -UGCCGGaGG-GGCG---GGGGCGCC-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 10971 0.69 0.195984
Target:  5'- -gGGCCgCCCCGCCCCgCGCccgacuGGCG-Cu -3'
miRNA:   3'- ugCCGGaGGGGCGGGG-GCGc-----CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 11018 0.72 0.113971
Target:  5'- gACGGCCUCgucgccgggCCCGuCCCCCGgcggcacuCGGGCGcCg -3'
miRNA:   3'- -UGCCGGAG---------GGGC-GGGGGC--------GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 11519 0.66 0.311741
Target:  5'- uCGGCCcgaaaaaaUCUCUGaCCCCGCguuGGGCGAa -3'
miRNA:   3'- uGCCGG--------AGGGGCgGGGGCG---CCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 11620 0.66 0.325128
Target:  5'- cACcGCCcUCCCGCCCCCaCGcGGCGcCc -3'
miRNA:   3'- -UGcCGGaGGGGCGGGGGcGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 11883 0.69 0.200065
Target:  5'- gGCGaGCCcgCCCgcacgcgCGCCCgCCGCGGGCccGGCc -3'
miRNA:   3'- -UGC-CGGa-GGG-------GCGGG-GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 12130 0.66 0.311741
Target:  5'- gAUGGCg--CCCGCCgCCGCGG-CGGCc -3'
miRNA:   3'- -UGCCGgagGGGCGGgGGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 12338 0.66 0.338938
Target:  5'- uUGGCCggcgcggCCGCCgCCGCG-GCGGCa -3'
miRNA:   3'- uGCCGGagg----GGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 12492 0.72 0.131609
Target:  5'- gUGGaCUCUCCaugGCCCCC-CGGGCGACc -3'
miRNA:   3'- uGCCgGAGGGG---CGGGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 12731 0.68 0.224606
Target:  5'- -gGGCC-CgCCgGCCCCCuggGCGGGCccGGCg -3'
miRNA:   3'- ugCCGGaG-GGgCGGGGG---CGCCCG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.