miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 13052 0.67 0.2624
Target:  5'- -gGGCCgCgCgCGCCCCUGCcGGGCG-Cg -3'
miRNA:   3'- ugCCGGaGgG-GCGGGGGCG-CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 13652 0.68 0.224606
Target:  5'- cGCGcGCCgUgCCGCCgCCGCGGGgGGg -3'
miRNA:   3'- -UGC-CGGaGgGGCGGgGGCGCCCgCUg -5'
23780 3' -69.5 NC_005261.1 + 14296 0.66 0.318381
Target:  5'- -aGGCCggCCCCGaCCgguagCCCGaGGaGCGACg -3'
miRNA:   3'- ugCCGGa-GGGGC-GG-----GGGCgCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 14778 0.66 0.325128
Target:  5'- -gGGCCgCCCCGCgcaggugccgcUCCCGCaGGCuGCg -3'
miRNA:   3'- ugCCGGaGGGGCG-----------GGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 15479 0.67 0.274109
Target:  5'- cGCGGCggacacgCgCCGCUCgCUGCGGGCGGg -3'
miRNA:   3'- -UGCCGga-----GgGGCGGG-GGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 16212 0.66 0.33198
Target:  5'- gAUGGCCUCgaggcucggCCaGCCCUCG-GGGCGGu -3'
miRNA:   3'- -UGCCGGAG---------GGgCGGGGGCgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 16354 0.66 0.298776
Target:  5'- cCGGCUccguccucuUCCCCGCCgccuucUCCGUGGGCc-- -3'
miRNA:   3'- uGCCGG---------AGGGGCGG------GGGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 16424 0.66 0.311741
Target:  5'- -aGGCCcCCUCGa--CgGCGGGCGGCg -3'
miRNA:   3'- ugCCGGaGGGGCgggGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 17333 0.68 0.245603
Target:  5'- cCGGCCcagCuCCCGCCCCgCcCGGGCa-- -3'
miRNA:   3'- uGCCGGa--G-GGGCGGGG-GcGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 17548 0.67 0.285617
Target:  5'- gGCGGCgCgggCCCGCcguucggcgguggCCuuGCGGGCGAg -3'
miRNA:   3'- -UGCCG-Gag-GGGCG-------------GGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 19856 0.71 0.134784
Target:  5'- uCGGCUUCCUCGCgcgagaCCCCGCcGGCGGg -3'
miRNA:   3'- uGCCGGAGGGGCG------GGGGCGcCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 20638 0.68 0.240206
Target:  5'- cCGGCCcgguUCgCCGCCCgcaCCGCcGGUGGCg -3'
miRNA:   3'- uGCCGG----AGgGGCGGG---GGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 21616 0.67 0.2567
Target:  5'- cGCGaGCUucgggcgagggUCCCCGCCCCgGCGcGGaCGcCg -3'
miRNA:   3'- -UGC-CGG-----------AGGGGCGGGGgCGC-CC-GCuG- -5'
23780 3' -69.5 NC_005261.1 + 21808 0.67 0.268203
Target:  5'- cCGGCCgggCCggGCCCgCgGCGGGCGcGCg -3'
miRNA:   3'- uGCCGGa--GGggCGGG-GgCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 22627 0.66 0.338938
Target:  5'- cGCGuCCcgCCCCGUCCCgucccuagacgCGCuGGCGGCg -3'
miRNA:   3'- -UGCcGGa-GGGGCGGGG-----------GCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 22756 0.67 0.274109
Target:  5'- gGCGGCggCCCaCGCgUCUGgGGGCGGg -3'
miRNA:   3'- -UGCCGgaGGG-GCGgGGGCgCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 22814 0.67 0.280119
Target:  5'- gGCGGCgCUgCCgCCGCCgCCGuuGGCGcCg -3'
miRNA:   3'- -UGCCG-GA-GG-GGCGGgGGCgcCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 23606 0.67 0.274109
Target:  5'- gUGGCUgucgCCgCCGCUgCCGgGGcGCGGCg -3'
miRNA:   3'- uGCCGGa---GG-GGCGGgGGCgCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 24532 0.72 0.113971
Target:  5'- -aGGUgUCCCCGCCCaCGUaccuggccGGGCGGCg -3'
miRNA:   3'- ugCCGgAGGGGCGGGgGCG--------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 24877 0.83 0.019384
Target:  5'- cACGGCCugUCCCCGCCCCCuugcccgGCGGGCGcCc -3'
miRNA:   3'- -UGCCGG--AGGGGCGGGGG-------CGCCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.