miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 33270 0.74 0.091615
Target:  5'- cGCGGCCcccgUCCCCGUCCcgguCCGUGGGCa-- -3'
miRNA:   3'- -UGCCGG----AGGGGCGGG----GGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 33571 0.66 0.325128
Target:  5'- --cGCCagCCCUGCcagCCCCGCgagcaccagGGGCGGCg -3'
miRNA:   3'- ugcCGGa-GGGGCG---GGGGCG---------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 33633 0.75 0.073461
Target:  5'- gGCGcGCCccgcaCCCCGCCCCCGCGcGCGcCg -3'
miRNA:   3'- -UGC-CGGa----GGGGCGGGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 33780 0.72 0.113971
Target:  5'- cGCGGCgagCgCUggGCCCCgCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGga-GgGG--CGGGG-GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 33868 0.71 0.141345
Target:  5'- -gGGCC-CCCCGCCgCCCGCcuccGGCG-Cg -3'
miRNA:   3'- ugCCGGaGGGGCGG-GGGCGc---CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 34423 0.69 0.213236
Target:  5'- cGCGGCCcgCgCCUGCCCCUGCugccgaacgcgccgGGGC-ACg -3'
miRNA:   3'- -UGCCGGa-G-GGGCGGGGGCG--------------CCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 35069 0.76 0.066057
Target:  5'- gGCGGUCUCCgCGCCCCCucgcccucggagccGCGGugaGCGGCg -3'
miRNA:   3'- -UGCCGGAGGgGCGGGGG--------------CGCC---CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35129 0.78 0.042495
Target:  5'- gGCGGCgUcgcaCCCCGCCCCCGCGGcGCa-- -3'
miRNA:   3'- -UGCCGgA----GGGGCGGGGGCGCC-CGcug -5'
23780 3' -69.5 NC_005261.1 + 35385 0.68 0.224606
Target:  5'- cUGGCCccgacCCCCGCCCCCGCGcccaucuccaCGAUa -3'
miRNA:   3'- uGCCGGa----GGGGCGGGGGCGCcc--------GCUG- -5'
23780 3' -69.5 NC_005261.1 + 35429 0.7 0.162815
Target:  5'- gACGGCagaagCgCCCGCccgCCCCGCGGGUcuaGGCg -3'
miRNA:   3'- -UGCCGga---G-GGGCG---GGGGCGCCCG---CUG- -5'
23780 3' -69.5 NC_005261.1 + 35495 0.66 0.298776
Target:  5'- cGCGGCa--CCCGCccuugCCCCGCuGGcaGCGGCa -3'
miRNA:   3'- -UGCCGgagGGGCG-----GGGGCG-CC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35677 0.68 0.229708
Target:  5'- cCGGCCgcaCCCCcgccggcgaGCCCCgGUGGGCcgggGGCu -3'
miRNA:   3'- uGCCGGa--GGGG---------CGGGGgCGCCCG----CUG- -5'
23780 3' -69.5 NC_005261.1 + 35811 0.71 0.14715
Target:  5'- gACGGCCUggaCCCCGgCCCCGagaGcucggcgcagaaaaGGCGGCg -3'
miRNA:   3'- -UGCCGGA---GGGGCgGGGGCg--C--------------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 35920 0.7 0.166667
Target:  5'- cGCGGCC-CCgCGCCgcagCCCaGCGGGCGcCc -3'
miRNA:   3'- -UGCCGGaGGgGCGG----GGG-CGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 36017 0.69 0.187176
Target:  5'- cGCGGCCaaggcucuUCCCCGCCCCUaCcccGCGACc -3'
miRNA:   3'- -UGCCGG--------AGGGGCGGGGGcGcc-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 36985 0.69 0.191535
Target:  5'- uGCGGgCUCCa-GCCggagCCCGCGGGCuGCg -3'
miRNA:   3'- -UGCCgGAGGggCGG----GGGCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 37047 0.66 0.325128
Target:  5'- aACcGCCUgcCCCCGgUCCCGCGagcGGUGAUa -3'
miRNA:   3'- -UGcCGGA--GGGGCgGGGGCGC---CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 37724 0.74 0.083073
Target:  5'- uCGGCCcgccggagccCCCCGucgcCCCCCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGa---------GGGGC----GGGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 37860 0.67 0.280119
Target:  5'- uCGGCgUCCCCGaCgCCUgGCGGcGCGuGCu -3'
miRNA:   3'- uGCCGgAGGGGC-G-GGGgCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 38133 0.69 0.186744
Target:  5'- cGCGGCCgugcagaagaacuUCCCCGggaCCCCGCGGccGCaGCa -3'
miRNA:   3'- -UGCCGG-------------AGGGGCg--GGGGCGCC--CGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.