miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 38626 0.7 0.178718
Target:  5'- cGCGGCCgagCCCGCCgCCGaCGGugacggugaaaGCGGCg -3'
miRNA:   3'- -UGCCGGag-GGGCGGgGGC-GCC-----------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 39417 0.74 0.085134
Target:  5'- aGCGGCCaCCCCGUCCCC-CGGcGCGuCc -3'
miRNA:   3'- -UGCCGGaGGGGCGGGGGcGCC-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 39469 0.68 0.219601
Target:  5'- cGCGGCg-CCCCaacggGCCCgCCGCGGaCGAUg -3'
miRNA:   3'- -UGCCGgaGGGG-----CGGG-GGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 39542 0.74 0.087245
Target:  5'- cGCGGCCgccagCCCCGCgCgCGCGcGGCGGu -3'
miRNA:   3'- -UGCCGGa----GGGGCGgGgGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 39606 0.68 0.240206
Target:  5'- cGCGcGCCcCCgCCGCCCCCGuCGcGCaGACc -3'
miRNA:   3'- -UGC-CGGaGG-GGCGGGGGC-GCcCG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 39773 0.67 0.280119
Target:  5'- gAUGGCCUCgaggaCGUCgCCgGgGGGCGGCg -3'
miRNA:   3'- -UGCCGGAGgg---GCGG-GGgCgCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 42243 0.69 0.209875
Target:  5'- cGCGcagcGCCUCgaaCUGCCCgCGCGaGGCGGCc -3'
miRNA:   3'- -UGC----CGGAGg--GGCGGGgGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 42674 0.67 0.2624
Target:  5'- gGCGGCCgggCCgCCGCCggcagCCGCGcGGCcGCc -3'
miRNA:   3'- -UGCCGGa--GG-GGCGGg----GGCGC-CCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 43147 0.7 0.174617
Target:  5'- cGCGGCCUgCgCGCCgCCgacauCGCGGcGCGAUa -3'
miRNA:   3'- -UGCCGGAgGgGCGG-GG-----GCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 43284 0.69 0.187176
Target:  5'- cGCGGCCgCCU--UUCCCGCGGGgGGCg -3'
miRNA:   3'- -UGCCGGaGGGgcGGGGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 43419 0.7 0.182903
Target:  5'- gGCGGCCUCCgCCGCCggCGgGGaGCuGGCu -3'
miRNA:   3'- -UGCCGGAGG-GGCGGggGCgCC-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 43860 0.7 0.178718
Target:  5'- cGCGGCCgCgUCGUCCUCgGCGGcGCGGCu -3'
miRNA:   3'- -UGCCGGaGgGGCGGGGG-CGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 44031 0.7 0.182903
Target:  5'- gGCGGCCgCCgCGCggcggCCGCGGGCGGg -3'
miRNA:   3'- -UGCCGGaGGgGCGgg---GGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 44295 0.69 0.195984
Target:  5'- aGCGGCgggCCagggCCGCUgCCCGCGGGCGcCg -3'
miRNA:   3'- -UGCCGga-GG----GGCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 45204 0.66 0.33129
Target:  5'- cCGGCCUUCCggggcuuCGCCUUCGCGGuGCu-- -3'
miRNA:   3'- uGCCGGAGGG-------GCGGGGGCGCC-CGcug -5'
23780 3' -69.5 NC_005261.1 + 46261 0.69 0.195984
Target:  5'- gGCGGCCgcgaCCgUGUCCCCG-GGGCG-Cu -3'
miRNA:   3'- -UGCCGGa---GGgGCGGGGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 46998 0.69 0.216643
Target:  5'- cGCGcGCCgcgCCgCCGCgaugcggcgguccagCCCCGCGacGGCGGCg -3'
miRNA:   3'- -UGC-CGGa--GG-GGCG---------------GGGGCGC--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 47397 0.66 0.309769
Target:  5'- gGCGGCgCcgccCCCCGUgcacacgcgguacuCCCgGUGGGCGAa -3'
miRNA:   3'- -UGCCG-Ga---GGGGCG--------------GGGgCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 47688 0.71 0.148197
Target:  5'- cACGGCCgCCCgCGgCgCCGCGucGGCGGCg -3'
miRNA:   3'- -UGCCGGaGGG-GCgGgGGCGC--CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 47924 0.69 0.209875
Target:  5'- cGCGGCCgucacgUCCCGCgCgCCGCGcGCGAg -3'
miRNA:   3'- -UGCCGGa-----GGGGCGgG-GGCGCcCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.