miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 48615 0.73 0.098802
Target:  5'- cGCGGCCgcgcccagccccacgCCCCGCCCCUGCGccGGCc-- -3'
miRNA:   3'- -UGCCGGa--------------GGGGCGGGGGCGC--CCGcug -5'
23780 3' -69.5 NC_005261.1 + 48745 0.66 0.298776
Target:  5'- -aGGCaCUgcgcguagUCgCGCCCCC-CGGGCGGCc -3'
miRNA:   3'- ugCCG-GA--------GGgGCGGGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 50615 0.7 0.170204
Target:  5'- -gGGCg-CCCCgauugguGCUCCaCGCGGGCGGCg -3'
miRNA:   3'- ugCCGgaGGGG-------CGGGG-GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 50721 0.67 0.286233
Target:  5'- aACGcGCCUCCUCGCCCUCGUcGcCGcACg -3'
miRNA:   3'- -UGC-CGGAGGGGCGGGGGCGcCcGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 50791 0.66 0.325128
Target:  5'- gGCGGCCgCCCCGgCgCCGCcgccaugacGGGCu-- -3'
miRNA:   3'- -UGCCGGaGGGGCgGgGGCG---------CCCGcug -5'
23780 3' -69.5 NC_005261.1 + 51929 0.68 0.219601
Target:  5'- cGCGGCCUggUCCCGCUCgUCGCcGGCGcCa -3'
miRNA:   3'- -UGCCGGA--GGGGCGGG-GGCGcCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 52526 0.66 0.298776
Target:  5'- gACGGCCgCCCgaaaCGCUUCC-CGGGcCGGCu -3'
miRNA:   3'- -UGCCGGaGGG----GCGGGGGcGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 53113 0.66 0.311741
Target:  5'- cGCGGCgCUgCgCGCCgCCaacaGGGCGGCg -3'
miRNA:   3'- -UGCCG-GAgGgGCGGgGGcg--CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 53419 0.72 0.122496
Target:  5'- uGCGcGCC-CCCCGCCguccgccagCCCGuCGGGCGuCg -3'
miRNA:   3'- -UGC-CGGaGGGGCGG---------GGGC-GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 53552 0.69 0.213236
Target:  5'- uCGGCCgcgCCgCgGCCCaggcgcacuagcggCCGCGGGcCGGCg -3'
miRNA:   3'- uGCCGGa--GG-GgCGGG--------------GGCGCCC-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 53719 0.67 0.268203
Target:  5'- cGCGGCCagCUgcggCGCgCCCGCacGGGCGAg -3'
miRNA:   3'- -UGCCGGagGG----GCGgGGGCG--CCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 54107 0.68 0.245603
Target:  5'- gAUGGCCg-CCCGCacgaCCGCGGGCu-- -3'
miRNA:   3'- -UGCCGGagGGGCGgg--GGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 54752 0.68 0.224606
Target:  5'- cGCGcGCUcgaUCgCCGCCagugCgGCGGGCGACa -3'
miRNA:   3'- -UGC-CGG---AGgGGCGGg---GgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 54791 0.67 0.2624
Target:  5'- gGCGcGCC-CCgCCGCCUCCGCGuaGGCcACc -3'
miRNA:   3'- -UGC-CGGaGG-GGCGGGGGCGC--CCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 55003 0.66 0.303911
Target:  5'- gGCGGCCUCgugcacaacgacgcuCCCGUagccgccggCCCCGCGcagcugcgcggggccGGCGAg -3'
miRNA:   3'- -UGCCGGAG---------------GGGCG---------GGGGCGC---------------CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 55555 0.68 0.219601
Target:  5'- -aGGCCccgCCCacgcccacguCGCCCCCGCaguccgcGGCGGCg -3'
miRNA:   3'- ugCCGGa--GGG----------GCGGGGGCGc------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 56423 0.66 0.33198
Target:  5'- cGCGGCgcaCCCGCCUgCG-GaGGCGGCg -3'
miRNA:   3'- -UGCCGgagGGGCGGGgGCgC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 58080 0.67 0.286233
Target:  5'- gGCGGCgCcagggCCCGCgUCCuCGGGCGGCa -3'
miRNA:   3'- -UGCCG-Gag---GGGCGgGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 59593 0.68 0.240206
Target:  5'- cCGcGCCgCCaCCaCCUCCGCGGcGCGGCg -3'
miRNA:   3'- uGC-CGGaGG-GGcGGGGGCGCC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 59640 0.66 0.298776
Target:  5'- cGCGGUCg--CUGUCCUCgagGCGGGCGACu -3'
miRNA:   3'- -UGCCGGaggGGCGGGGG---CGCCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.