miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 129306 0.67 0.274109
Target:  5'- cCGGCg-CCCCGCgCCUGCGcuGGCGcCg -3'
miRNA:   3'- uGCCGgaGGGGCGgGGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 128187 0.71 0.14001
Target:  5'- uGCGGUCUugcgguugcucaaCCCCGCCCCCGCaccgcuuucuuauuGGGCc-- -3'
miRNA:   3'- -UGCCGGA-------------GGGGCGGGGGCG--------------CCCGcug -5'
23780 3' -69.5 NC_005261.1 + 127682 0.66 0.305206
Target:  5'- gGCGGCggCCgCUGCCCCgGCGGcGcCGGa -3'
miRNA:   3'- -UGCCGgaGG-GGCGGGGgCGCC-C-GCUg -5'
23780 3' -69.5 NC_005261.1 + 127314 0.73 0.1086
Target:  5'- gGCGGUggggCCCUGCCgCCCGCGGG-GGCc -3'
miRNA:   3'- -UGCCGga--GGGGCGG-GGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 127269 0.8 0.033894
Target:  5'- uACGGCCgggCCCGCCCgCCGCGGG-GGCa -3'
miRNA:   3'- -UGCCGGag-GGGCGGG-GGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 125518 0.68 0.224101
Target:  5'- gUGGCUUuuauacgCUCgCGCCgCCCGCaGGGCGGCg -3'
miRNA:   3'- uGCCGGA-------GGG-GCGG-GGGCG-CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 125294 0.66 0.33198
Target:  5'- -aGGCCgcgggCgCCGgaCCCGCGGGCG-Cu -3'
miRNA:   3'- ugCCGGa----GgGGCggGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 124898 0.7 0.159043
Target:  5'- cUGGCCgcCCCCGCCgCCaCGCGGGaaGCc -3'
miRNA:   3'- uGCCGGa-GGGGCGG-GG-GCGCCCgcUG- -5'
23780 3' -69.5 NC_005261.1 + 124231 0.69 0.187176
Target:  5'- aGCaGCCcaaCCGCCgCCGCGGGCaGGCg -3'
miRNA:   3'- -UGcCGGaggGGCGGgGGCGCCCG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 123237 0.69 0.198697
Target:  5'- aGCGGCCgcccaggcgcgggCCCCGCCCaUCGCccGUGACg -3'
miRNA:   3'- -UGCCGGa------------GGGGCGGG-GGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 122373 0.66 0.298776
Target:  5'- cGCGGCC-CCaCCGCggCCUGgGGGCG-Cu -3'
miRNA:   3'- -UGCCGGaGG-GGCGg-GGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 122294 0.7 0.166667
Target:  5'- cGCGGC---CCCGCUgCCGCaGGCGACg -3'
miRNA:   3'- -UGCCGgagGGGCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 121600 0.68 0.219601
Target:  5'- uCGGCCUcguucucguacaCCgCCGCCuCCCGCcgcucGGCGGCc -3'
miRNA:   3'- uGCCGGA------------GG-GGCGG-GGGCGc----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 121415 0.7 0.159043
Target:  5'- gACGGCUg--CCGCCgCCGCuacgGGGCGGCg -3'
miRNA:   3'- -UGCCGGaggGGCGGgGGCG----CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 120606 0.66 0.311741
Target:  5'- uGCGGCCUCggcgCCgugggGCUCCUGCuGGUGGCg -3'
miRNA:   3'- -UGCCGGAGg---GG-----CGGGGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 120375 0.66 0.33198
Target:  5'- gACGGCg-CCgCGCCCUCGCGcaccgagcaGaGCGGCg -3'
miRNA:   3'- -UGCCGgaGGgGCGGGGGCGC---------C-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 119690 0.73 0.111255
Target:  5'- uCGGCaggUCCCGCUCCaCGCGcGGCGAUg -3'
miRNA:   3'- uGCCGga-GGGGCGGGG-GCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 119522 0.71 0.141345
Target:  5'- cGCGGCCccggUCCCCGCggccgagcaaggCCCCGCcgcgGGGCcGCa -3'
miRNA:   3'- -UGCCGG----AGGGGCG------------GGGGCG----CCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 118870 0.75 0.069923
Target:  5'- cGCGGCCcuggCCUCGgCCaCCGCGGGCGcGCu -3'
miRNA:   3'- -UGCCGGa---GGGGCgGG-GGCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 118701 0.66 0.305206
Target:  5'- cGCGGCgUggUCCUGCUCagcguCGCGGGCGGg -3'
miRNA:   3'- -UGCCGgA--GGGGCGGGg----GCGCCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.