miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 109754 0.66 0.298776
Target:  5'- uGCGG-CUCCCgGCCgCCGCgucgccgucucGGGCGuCc -3'
miRNA:   3'- -UGCCgGAGGGgCGGgGGCG-----------CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 109494 0.72 0.128504
Target:  5'- aAUGGCCggggCCCgCGCCCgCCGCGGGg--- -3'
miRNA:   3'- -UGCCGGa---GGG-GCGGG-GGCGCCCgcug -5'
23780 3' -69.5 NC_005261.1 + 108652 0.67 0.292452
Target:  5'- -aGGCCUCCgCCaGCCCCgGCGucGCGuCc -3'
miRNA:   3'- ugCCGGAGG-GG-CGGGGgCGCc-CGCuG- -5'
23780 3' -69.5 NC_005261.1 + 108594 0.66 0.311741
Target:  5'- uUGGCCUCgCCCacgggcaccaGCgCCU-CGGGCGGCa -3'
miRNA:   3'- uGCCGGAG-GGG----------CGgGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 108308 0.67 0.292452
Target:  5'- cACGGCgUCCCagacgGCCgCCGCGugcuccGCGACc -3'
miRNA:   3'- -UGCCGgAGGGg----CGGgGGCGCc-----CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 107846 0.66 0.305206
Target:  5'- cCGGUCgccgCCgCCGCCCUCGCcGGCcGCc -3'
miRNA:   3'- uGCCGGa---GG-GGCGGGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 107731 0.67 0.268203
Target:  5'- gGCGGCUgcgCCUCGgCCgCGgGGGgGGCc -3'
miRNA:   3'- -UGCCGGa--GGGGCgGGgGCgCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 107670 0.66 0.325128
Target:  5'- cGCGGCC-CCgccgggcguugCCGCCgCgGCGGG-GGCg -3'
miRNA:   3'- -UGCCGGaGG-----------GGCGGgGgCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 107340 0.67 0.285617
Target:  5'- cACGGCCUCCgCGUugcggaccugcguCgUCGUGGGCGcCg -3'
miRNA:   3'- -UGCCGGAGGgGCG-------------GgGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 107184 0.67 0.286233
Target:  5'- gGCGGCguagCCCUGCagCCGCGcgaaGGCGGCg -3'
miRNA:   3'- -UGCCGga--GGGGCGggGGCGC----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 106569 0.67 0.286233
Target:  5'- cGCGcGCCggCCCCgggGCCgCCGCGcGGCG-Cu -3'
miRNA:   3'- -UGC-CGGa-GGGG---CGGgGGCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 106334 0.66 0.33198
Target:  5'- cACGGCC-CCgccgccgcguCCGCCCCCGCcgccGcGCuGACg -3'
miRNA:   3'- -UGCCGGaGG----------GGCGGGGGCGc---C-CG-CUG- -5'
23780 3' -69.5 NC_005261.1 + 106257 0.73 0.103466
Target:  5'- -gGGCCgccgCCgCCGCUgCCGcCGGGCGGCc -3'
miRNA:   3'- ugCCGGa---GG-GGCGGgGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 105961 0.68 0.224606
Target:  5'- gAUGGCCUCggCGCCCagCGCGGcGuCGACg -3'
miRNA:   3'- -UGCCGGAGggGCGGGg-GCGCC-C-GCUG- -5'
23780 3' -69.5 NC_005261.1 + 105618 0.76 0.064922
Target:  5'- uGCGGCacgUCCCCGCUCCCguGCGGGUcaaaGACg -3'
miRNA:   3'- -UGCCGg--AGGGGCGGGGG--CGCCCG----CUG- -5'
23780 3' -69.5 NC_005261.1 + 105464 0.66 0.305206
Target:  5'- cACGGCCgCCCUcaGCuCCUCG-GGGCGcGCg -3'
miRNA:   3'- -UGCCGGaGGGG--CG-GGGGCgCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 105252 0.69 0.187176
Target:  5'- gGCGGCaUCCgCGCgacaggCUCgGCGGGCGGCa -3'
miRNA:   3'- -UGCCGgAGGgGCG------GGGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 105168 0.66 0.33129
Target:  5'- gGCGGCgUCCacggggcCCGCCgCCGCc-GCGGCa -3'
miRNA:   3'- -UGCCGgAGG-------GGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 105098 0.68 0.234908
Target:  5'- cCGGaCCUUCCgcgggggcuUGCCCgCGCGGGCG-Cg -3'
miRNA:   3'- uGCC-GGAGGG---------GCGGGgGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 104975 0.8 0.032228
Target:  5'- aGCGuCCUcCCCCGCCCCggcgcccagCGCGGGCGGCg -3'
miRNA:   3'- -UGCcGGA-GGGGCGGGG---------GCGCCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.