miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 104443 0.68 0.240206
Target:  5'- -gGGCCcgCgUCGCCgCCGCcGGCGGCg -3'
miRNA:   3'- ugCCGGa-GgGGCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 104202 0.67 0.286233
Target:  5'- gACGGCgUCCaggCGCUCgCGCGcGGCGcGCa -3'
miRNA:   3'- -UGCCGgAGGg--GCGGGgGCGC-CCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 104155 0.73 0.100986
Target:  5'- uCGGCCaCCgCGCCgUCCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGaGGgGCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 103968 0.7 0.168231
Target:  5'- gGCGGCCgccacacggaagcgcUCgCCGCCgCCGCGGuCGGCc -3'
miRNA:   3'- -UGCCGG---------------AGgGGCGGgGGCGCCcGCUG- -5'
23780 3' -69.5 NC_005261.1 + 103537 0.68 0.245603
Target:  5'- cGCcGCCUCCUCGgCCCC-CGGGCc-- -3'
miRNA:   3'- -UGcCGGAGGGGCgGGGGcGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 103452 0.66 0.305206
Target:  5'- cGCGGUCggCCgCCGCgCCCGUcgccaGGGCGuCc -3'
miRNA:   3'- -UGCCGGa-GG-GGCGgGGGCG-----CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 103396 0.7 0.166667
Target:  5'- cGCGGCCgccugcgCCuCCaGCUCCgCGCGGGCcGCg -3'
miRNA:   3'- -UGCCGGa------GG-GG-CGGGG-GCGCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 103000 0.66 0.338938
Target:  5'- gGCGGCCgCCaCGCgCUCCGCGuGGCu-- -3'
miRNA:   3'- -UGCCGGaGGgGCG-GGGGCGC-CCGcug -5'
23780 3' -69.5 NC_005261.1 + 102958 0.75 0.079873
Target:  5'- gGCGGCCgcgggcgccgcgggCUCCGCCgCCGCGcGCGACa -3'
miRNA:   3'- -UGCCGGa-------------GGGGCGGgGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102774 0.68 0.245603
Target:  5'- aGCGcGCCcgaggCCUCGCCCcggCCGCGaGcGCGGCg -3'
miRNA:   3'- -UGC-CGGa----GGGGCGGG---GGCGC-C-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102590 0.69 0.21372
Target:  5'- gGCGGCCUCgCCCGCgCCuuCCGCGuccucgccgccaGCGGCc -3'
miRNA:   3'- -UGCCGGAG-GGGCG-GG--GGCGCc-----------CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 102279 0.67 0.268203
Target:  5'- uCGGCCUgCCgCGCCagcggCCGCGGGUc-- -3'
miRNA:   3'- uGCCGGAgGG-GCGGg----GGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 101833 0.66 0.305206
Target:  5'- cGCGGCUgaUCUCCGCCgcgcgCCCGCcGGCcGCc -3'
miRNA:   3'- -UGCCGG--AGGGGCGG-----GGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 100899 0.7 0.170601
Target:  5'- cGCGGCCUCgCCgCGCaCCgCCGCGaGCGuCg -3'
miRNA:   3'- -UGCCGGAG-GG-GCG-GG-GGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 100723 0.73 0.1086
Target:  5'- cGCGGCCgcgCCgCGCgCgCGCGcGGCGGCg -3'
miRNA:   3'- -UGCCGGa--GGgGCGgGgGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 100207 0.7 0.159043
Target:  5'- gGCGGCCagcagCCCCGCguagagcucggCCaCCGcCGGGCGcACg -3'
miRNA:   3'- -UGCCGGa----GGGGCG-----------GG-GGC-GCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 100058 0.67 0.274109
Target:  5'- aGCGcGCCg--CCGCCgCCCGgGGGCG-Cg -3'
miRNA:   3'- -UGC-CGGaggGGCGG-GGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 98537 0.69 0.195984
Target:  5'- cCGGCCgguaggcugCgCCCGCgaaaUCCgGCGGGCGGCc -3'
miRNA:   3'- uGCCGGa--------G-GGGCG----GGGgCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98454 0.68 0.251101
Target:  5'- gGCGGCg--CCCGCaaaaUCCGaCGGGCGGCc -3'
miRNA:   3'- -UGCCGgagGGGCGg---GGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98301 0.67 0.274109
Target:  5'- cGCGGCCUCgggggcgggCgCCGCCgCCaGCG-GCGGCg -3'
miRNA:   3'- -UGCCGGAG---------G-GGCGGgGG-CGCcCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.