miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 98142 0.68 0.251101
Target:  5'- gGCGGCCgUCggCGgCaaggCCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGG-AGggGCgGg---GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 98049 0.67 0.286233
Target:  5'- gGCGGCCgcgggCgGCgggaCCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGGagg--GgCGgg--GGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 97770 0.67 0.2567
Target:  5'- cGCGGCCggcaucgacUCCCgaGCCCCgGgCcGGCGACc -3'
miRNA:   3'- -UGCCGG---------AGGGg-CGGGGgC-GcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 97390 0.74 0.081059
Target:  5'- cGCGGCUUUCgCGCCUgCCGCGGGCuuGGCg -3'
miRNA:   3'- -UGCCGGAGGgGCGGG-GGCGCCCG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 96224 0.66 0.298776
Target:  5'- uCGGCCUgaagcgaaCCUUcCUCCCGCGGGUGGu -3'
miRNA:   3'- uGCCGGA--------GGGGcGGGGGCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 95824 0.67 0.286233
Target:  5'- cGCGGuCCUCgCgGCgCuuGUGGGCGGa -3'
miRNA:   3'- -UGCC-GGAGgGgCGgGggCGCCCGCUg -5'
23780 3' -69.5 NC_005261.1 + 95742 0.7 0.159043
Target:  5'- aGCGGCgCcgCCgCCGCCgCCGgGGGCGcCg -3'
miRNA:   3'- -UGCCG-Ga-GG-GGCGGgGGCgCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 95380 0.66 0.311741
Target:  5'- cGCGGCC-CCCCggcgcGCCgCUCGCGGccaucaCGGCg -3'
miRNA:   3'- -UGCCGGaGGGG-----CGG-GGGCGCCc-----GCUG- -5'
23780 3' -69.5 NC_005261.1 + 95205 0.67 0.292452
Target:  5'- cCGcGCCg-CCCGCCCgCGCGGuGCGu- -3'
miRNA:   3'- uGC-CGGagGGGCGGGgGCGCC-CGCug -5'
23780 3' -69.5 NC_005261.1 + 94988 0.67 0.268203
Target:  5'- -aGGCCccgcgcgcgCCCCG-CCCUGCGgGGCGGg -3'
miRNA:   3'- ugCCGGa--------GGGGCgGGGGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 94399 0.66 0.311082
Target:  5'- gGCGGCCUCCUCGacgaagggcgcgaCgUCCGCGGcGCcGCc -3'
miRNA:   3'- -UGCCGGAGGGGC-------------GgGGGCGCC-CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 93917 0.68 0.245603
Target:  5'- cGCGGCg-CCCgcgggcuugCGCCgUCCGCGGGCGcCg -3'
miRNA:   3'- -UGCCGgaGGG---------GCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 93812 0.7 0.162815
Target:  5'- cGCGcGCCgccgCCaCCGCCgcagCCGcCGGGCGGCg -3'
miRNA:   3'- -UGC-CGGa---GG-GGCGGg---GGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 93701 0.66 0.33198
Target:  5'- gGCGGgugccucuuCCUCCUCGUCgUCGUcGGCGGCg -3'
miRNA:   3'- -UGCC---------GGAGGGGCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 91492 0.68 0.224606
Target:  5'- cGCGGCCgccgCCCGCCCCgCGCGccugcuGGUcucgGACa -3'
miRNA:   3'- -UGCCGGag--GGGCGGGG-GCGC------CCG----CUG- -5'
23780 3' -69.5 NC_005261.1 + 91454 0.7 0.170601
Target:  5'- cGCGGCacggCCCCGCCCgCGCcucccaGCGGCg -3'
miRNA:   3'- -UGCCGga--GGGGCGGGgGCGcc----CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 91132 0.69 0.187176
Target:  5'- cGCGGCCgaggccucagCCgUGCCgCCCGgcgaguggccCGGGCGGCa -3'
miRNA:   3'- -UGCCGGa---------GGgGCGG-GGGC----------GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 90041 0.66 0.304558
Target:  5'- -gGGCUUCCugcugccggacagCCagcgGCgCCCCGCGGGCGcCg -3'
miRNA:   3'- ugCCGGAGG-------------GG----CG-GGGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 89427 0.67 0.273514
Target:  5'- cGCGGCCgccgggcUCCCCGCgCCCGCcgugcuGGaGUuuGACa -3'
miRNA:   3'- -UGCCGG-------AGGGGCGgGGGCG------CC-CG--CUG- -5'
23780 3' -69.5 NC_005261.1 + 88342 0.7 0.166667
Target:  5'- gGCGGCg-CCCCGCCgCCGC-GGCGuucACa -3'
miRNA:   3'- -UGCCGgaGGGGCGGgGGCGcCCGC---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.