Results 61 - 80 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23780 | 3' | -69.5 | NC_005261.1 | + | 97390 | 0.74 | 0.081059 |
Target: 5'- cGCGGCUUUCgCGCCUgCCGCGGGCuuGGCg -3' miRNA: 3'- -UGCCGGAGGgGCGGG-GGCGCCCG--CUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 2768 | 0.74 | 0.083073 |
Target: 5'- -gGGCCUCgaggCCCGCCCCCGagGGGCuGCc -3' miRNA: 3'- ugCCGGAG----GGGCGGGGGCg-CCCGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 127314 | 0.73 | 0.1086 |
Target: 5'- gGCGGUggggCCCUGCCgCCCGCGGG-GGCc -3' miRNA: 3'- -UGCCGga--GGGGCGG-GGGCGCCCgCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 100723 | 0.73 | 0.1086 |
Target: 5'- cGCGGCCgcgCCgCGCgCgCGCGcGGCGGCg -3' miRNA: 3'- -UGCCGGa--GGgGCGgGgGCGC-CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 119690 | 0.73 | 0.111255 |
Target: 5'- uCGGCaggUCCCGCUCCaCGCGcGGCGAUg -3' miRNA: 3'- uGCCGga-GGGGCGGGG-GCGC-CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 32395 | 0.73 | 0.111255 |
Target: 5'- gGCGGCgUCCCggagcgcgUGCCgCCGCcGGCGACg -3' miRNA: 3'- -UGCCGgAGGG--------GCGGgGGCGcCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 130197 | 0.73 | 0.111255 |
Target: 5'- gACGGCCaCCaCCGCCuCCUGCaGGCGGa -3' miRNA: 3'- -UGCCGGaGG-GGCGG-GGGCGcCCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 24532 | 0.72 | 0.113971 |
Target: 5'- -aGGUgUCCCCGCCCaCGUaccuggccGGGCGGCg -3' miRNA: 3'- ugCCGgAGGGGCGGGgGCG--------CCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 33780 | 0.72 | 0.113971 |
Target: 5'- cGCGGCgagCgCUggGCCCCgCGCGGGCGGCg -3' miRNA: 3'- -UGCCGga-GgGG--CGGGG-GCGCCCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 11018 | 0.72 | 0.113971 |
Target: 5'- gACGGCCUCgucgccgggCCCGuCCCCCGgcggcacuCGGGCGcCg -3' miRNA: 3'- -UGCCGGAG---------GGGC-GGGGGC--------GCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 62221 | 0.73 | 0.106004 |
Target: 5'- cGCGGCCgcgUCUgCGCCCUCGCGGuGCuGCa -3' miRNA: 3'- -UGCCGG---AGGgGCGGGGGCGCC-CGcUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 2397 | 0.73 | 0.103466 |
Target: 5'- gGCGGCgagcgCgCCCGCgggCCCCGCGcGGCGGCg -3' miRNA: 3'- -UGCCGga---G-GGGCG---GGGGCGC-CCGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 37724 | 0.74 | 0.083073 |
Target: 5'- uCGGCCcgccggagccCCCCGucgcCCCCCGCGGGCGcCg -3' miRNA: 3'- uGCCGGa---------GGGGC----GGGGGCGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 39417 | 0.74 | 0.085134 |
Target: 5'- aGCGGCCaCCCCGUCCCC-CGGcGCGuCc -3' miRNA: 3'- -UGCCGGaGGGGCGGGGGcGCC-CGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 39542 | 0.74 | 0.087245 |
Target: 5'- cGCGGCCgccagCCCCGCgCgCGCGcGGCGGu -3' miRNA: 3'- -UGCCGGa----GGGGCGgGgGCGC-CCGCUg -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 33270 | 0.74 | 0.091615 |
Target: 5'- cGCGGCCcccgUCCCCGUCCcgguCCGUGGGCa-- -3' miRNA: 3'- -UGCCGG----AGGGGCGGG----GGCGCCCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 83059 | 0.74 | 0.093877 |
Target: 5'- -gGGgCUCCCugcgCGCCCCCGCGG-CGGCc -3' miRNA: 3'- ugCCgGAGGG----GCGGGGGCGCCcGCUG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 48615 | 0.73 | 0.098802 |
Target: 5'- cGCGGCCgcgcccagccccacgCCCCGCCCCUGCGccGGCc-- -3' miRNA: 3'- -UGCCGGa--------------GGGGCGGGGGCGC--CCGcug -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 104155 | 0.73 | 0.100986 |
Target: 5'- uCGGCCaCCgCGCCgUCCGCGGGCGcCg -3' miRNA: 3'- uGCCGGaGGgGCGG-GGGCGCCCGCuG- -5' |
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23780 | 3' | -69.5 | NC_005261.1 | + | 106257 | 0.73 | 0.103466 |
Target: 5'- -gGGCCgccgCCgCCGCUgCCGcCGGGCGGCc -3' miRNA: 3'- ugCCGGa---GG-GGCGGgGGC-GCCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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