miRNA display CGI


Results 81 - 100 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 53419 0.72 0.122496
Target:  5'- uGCGcGCC-CCCCGCCguccgccagCCCGuCGGGCGuCg -3'
miRNA:   3'- -UGC-CGGaGGGGCGG---------GGGC-GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 109805 0.72 0.125467
Target:  5'- gACGGCCggCgCCGCUUCCGCcGcGGCGGCc -3'
miRNA:   3'- -UGCCGGa-GgGGCGGGGGCG-C-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 86880 0.72 0.125467
Target:  5'- gGCGGCCUuggCCgCGCCCugguCCGCGcGCGGCg -3'
miRNA:   3'- -UGCCGGA---GGgGCGGG----GGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 109494 0.72 0.128504
Target:  5'- aAUGGCCggggCCCgCGCCCgCCGCGGGg--- -3'
miRNA:   3'- -UGCCGGa---GGG-GCGGG-GGCGCCCgcug -5'
23780 3' -69.5 NC_005261.1 + 96 0.72 0.128504
Target:  5'- gGCGcGCCcccgggCCCCGCCgCCCGCGccGGCGcCg -3'
miRNA:   3'- -UGC-CGGa-----GGGGCGG-GGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 137779 0.72 0.128504
Target:  5'- gGCGcGCCcccgggCCCCGCCgCCCGCGccGGCGcCg -3'
miRNA:   3'- -UGC-CGGa-----GGGGCGG-GGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 12492 0.72 0.131609
Target:  5'- gUGGaCUCUCCaugGCCCCC-CGGGCGACc -3'
miRNA:   3'- uGCCgGAGGGG---CGGGGGcGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 11018 0.72 0.113971
Target:  5'- gACGGCCUCgucgccgggCCCGuCCCCCGgcggcacuCGGGCGcCg -3'
miRNA:   3'- -UGCCGGAG---------GGGC-GGGGGC--------GCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 33780 0.72 0.113971
Target:  5'- cGCGGCgagCgCUggGCCCCgCGCGGGCGGCg -3'
miRNA:   3'- -UGCCGga-GgGG--CGGGG-GCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 24532 0.72 0.113971
Target:  5'- -aGGUgUCCCCGCCCaCGUaccuggccGGGCGGCg -3'
miRNA:   3'- ugCCGgAGGGGCGGGgGCG--------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 48615 0.73 0.098802
Target:  5'- cGCGGCCgcgcccagccccacgCCCCGCCCCUGCGccGGCc-- -3'
miRNA:   3'- -UGCCGGa--------------GGGGCGGGGGCGC--CCGcug -5'
23780 3' -69.5 NC_005261.1 + 104155 0.73 0.100986
Target:  5'- uCGGCCaCCgCGCCgUCCGCGGGCGcCg -3'
miRNA:   3'- uGCCGGaGGgGCGG-GGGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 106257 0.73 0.103466
Target:  5'- -gGGCCgccgCCgCCGCUgCCGcCGGGCGGCc -3'
miRNA:   3'- ugCCGGa---GG-GGCGGgGGC-GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 2397 0.73 0.103466
Target:  5'- gGCGGCgagcgCgCCCGCgggCCCCGCGcGGCGGCg -3'
miRNA:   3'- -UGCCGga---G-GGGCG---GGGGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 62221 0.73 0.106004
Target:  5'- cGCGGCCgcgUCUgCGCCCUCGCGGuGCuGCa -3'
miRNA:   3'- -UGCCGG---AGGgGCGGGGGCGCC-CGcUG- -5'
23780 3' -69.5 NC_005261.1 + 127314 0.73 0.1086
Target:  5'- gGCGGUggggCCCUGCCgCCCGCGGG-GGCc -3'
miRNA:   3'- -UGCCGga--GGGGCGG-GGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 100723 0.73 0.1086
Target:  5'- cGCGGCCgcgCCgCGCgCgCGCGcGGCGGCg -3'
miRNA:   3'- -UGCCGGa--GGgGCGgGgGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 119690 0.73 0.111255
Target:  5'- uCGGCaggUCCCGCUCCaCGCGcGGCGAUg -3'
miRNA:   3'- uGCCGga-GGGGCGGGG-GCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 32395 0.73 0.111255
Target:  5'- gGCGGCgUCCCggagcgcgUGCCgCCGCcGGCGACg -3'
miRNA:   3'- -UGCCGgAGGG--------GCGGgGGCGcCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 130197 0.73 0.111255
Target:  5'- gACGGCCaCCaCCGCCuCCUGCaGGCGGa -3'
miRNA:   3'- -UGCCGGaGG-GGCGG-GGGCGcCCGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.