miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 105168 0.66 0.33129
Target:  5'- gGCGGCgUCCacggggcCCGCCgCCGCc-GCGGCa -3'
miRNA:   3'- -UGCCGgAGG-------GGCGGgGGCGccCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 45204 0.66 0.33129
Target:  5'- cCGGCCUUCCggggcuuCGCCUUCGCGGuGCu-- -3'
miRNA:   3'- uGCCGGAGGG-------GCGGGGGCGCC-CGcug -5'
23780 3' -69.5 NC_005261.1 + 116531 0.66 0.325128
Target:  5'- -aGGCCcgccgCUCCGCgCCCGCGcGCGuCa -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 11620 0.66 0.325128
Target:  5'- cACcGCCcUCCCGCCCCCaCGcGGCGcCc -3'
miRNA:   3'- -UGcCGGaGGGGCGGGGGcGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 14778 0.66 0.325128
Target:  5'- -gGGCCgCCCCGCgcaggugccgcUCCCGCaGGCuGCg -3'
miRNA:   3'- ugCCGGaGGGGCG-----------GGGGCGcCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 37047 0.66 0.325128
Target:  5'- aACcGCCUgcCCCCGgUCCCGCGagcGGUGAUa -3'
miRNA:   3'- -UGcCGGA--GGGGCgGGGGCGC---CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 107670 0.66 0.325128
Target:  5'- cGCGGCC-CCgccgggcguugCCGCCgCgGCGGG-GGCg -3'
miRNA:   3'- -UGCCGGaGG-----------GGCGGgGgCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 61000 0.66 0.325128
Target:  5'- cCGcGCCUCCggcuccggcaUCGCCgUCGUGgGGCGGCa -3'
miRNA:   3'- uGC-CGGAGG----------GGCGGgGGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 9765 0.66 0.325128
Target:  5'- cGCGuGCCgacgaCCCCGaaaCCCgCCGCGaGGUGAg -3'
miRNA:   3'- -UGC-CGGa----GGGGC---GGG-GGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 68983 0.66 0.325128
Target:  5'- cGCGGCCcuUUUCgGgCCgCGCGGGCGcCg -3'
miRNA:   3'- -UGCCGG--AGGGgCgGGgGCGCCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 50791 0.66 0.325128
Target:  5'- gGCGGCCgCCCCGgCgCCGCcgccaugacGGGCu-- -3'
miRNA:   3'- -UGCCGGaGGGGCgGgGGCG---------CCCGcug -5'
23780 3' -69.5 NC_005261.1 + 33571 0.66 0.325128
Target:  5'- --cGCCagCCCUGCcagCCCCGCgagcaccagGGGCGGCg -3'
miRNA:   3'- ugcCGGa-GGGGCG---GGGGCG---------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 62869 0.66 0.32377
Target:  5'- gGCGGCCUUUUaugcgcggcgcaGCCCgCGCGaGGCGGg -3'
miRNA:   3'- -UGCCGGAGGGg-----------CGGGgGCGC-CCGCUg -5'
23780 3' -69.5 NC_005261.1 + 138014 0.66 0.318381
Target:  5'- gGCGGCCcgcagCCCgGCgcggCCCgGCGgcgguGGCGGCg -3'
miRNA:   3'- -UGCCGGa----GGGgCG----GGGgCGC-----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 84657 0.66 0.318381
Target:  5'- cCGGCUggcgcCgCCCGCgCCCGCGGccGCGcACa -3'
miRNA:   3'- uGCCGGa----G-GGGCGgGGGCGCC--CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 135115 0.66 0.318381
Target:  5'- gGCGGaCC-CCgCGUCUCCGCaGcGCGGCg -3'
miRNA:   3'- -UGCC-GGaGGgGCGGGGGCGcC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 343 0.66 0.318381
Target:  5'- gGCGGCCcgcagCCCgGCgcggCCCgGCGgcgguGGCGGCg -3'
miRNA:   3'- -UGCCGGa----GGGgCG----GGGgCGC-----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 118189 0.66 0.318381
Target:  5'- -gGGCCgcgggCCCCGCgCCUGCcgcgcugcgcgGGGCG-Cu -3'
miRNA:   3'- ugCCGGa----GGGGCGgGGGCG-----------CCCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 71604 0.66 0.318381
Target:  5'- -aGGCC-CgCCGCCgcggCCCGggcgcgggccCGGGCGGCg -3'
miRNA:   3'- ugCCGGaGgGGCGG----GGGC----------GCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 14296 0.66 0.318381
Target:  5'- -aGGCCggCCCCGaCCgguagCCCGaGGaGCGACg -3'
miRNA:   3'- ugCCGGa-GGGGC-GG-----GGGCgCC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.