miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 5' -53.2 NC_005261.1 + 68846 0.65 0.977779
Target:  5'- cCCGU-CCCGCGgGGACGcccucugccgcggcuGUGCGCc -3'
miRNA:   3'- -GGCAcGGGCGCaUCUGUuu-------------CAUGCGc -5'
23780 5' -53.2 NC_005261.1 + 88862 0.66 0.977056
Target:  5'- gCCGcGCCuCGCG-GGACAGccucuccguugcgguGGUuaGCGCGg -3'
miRNA:   3'- -GGCaCGG-GCGCaUCUGUU---------------UCA--UGCGC- -5'
23780 5' -53.2 NC_005261.1 + 108893 0.66 0.976066
Target:  5'- gCCGcgcUGCCCGCc--GGCGAgcGGgGCGCGg -3'
miRNA:   3'- -GGC---ACGGGCGcauCUGUU--UCaUGCGC- -5'
23780 5' -53.2 NC_005261.1 + 48056 0.66 0.976066
Target:  5'- gUCGggGCCCGCGgcccACGccGAGUACaGCGa -3'
miRNA:   3'- -GGCa-CGGGCGCauc-UGU--UUCAUG-CGC- -5'
23780 5' -53.2 NC_005261.1 + 110520 0.66 0.976066
Target:  5'- gCCGUcGUCUGCG-GGGCGcAGgaggGCGCGc -3'
miRNA:   3'- -GGCA-CGGGCGCaUCUGUuUCa---UGCGC- -5'
23780 5' -53.2 NC_005261.1 + 135026 0.66 0.976066
Target:  5'- aCGcGgCCGCGgcGGCGAGGccgACGCc -3'
miRNA:   3'- gGCaCgGGCGCauCUGUUUCa--UGCGc -5'
23780 5' -53.2 NC_005261.1 + 100937 0.66 0.976066
Target:  5'- gCCGcugcagGCCCGCGUccACGgcGcGCGCGg -3'
miRNA:   3'- -GGCa-----CGGGCGCAucUGUuuCaUGCGC- -5'
23780 5' -53.2 NC_005261.1 + 31420 0.66 0.976066
Target:  5'- cCCGcUGCCCGgGgAGGCGcuGgcgGCGCc -3'
miRNA:   3'- -GGC-ACGGGCgCaUCUGUuuCa--UGCGc -5'
23780 5' -53.2 NC_005261.1 + 92901 0.66 0.976066
Target:  5'- gUGUGCuCCaGCG-AGACGAGGgccACGCc -3'
miRNA:   3'- gGCACG-GG-CGCaUCUGUUUCa--UGCGc -5'
23780 5' -53.2 NC_005261.1 + 95489 0.66 0.976066
Target:  5'- ---gGCCCGCGgcGGCAucGaccCGCGg -3'
miRNA:   3'- ggcaCGGGCGCauCUGUuuCau-GCGC- -5'
23780 5' -53.2 NC_005261.1 + 4517 0.66 0.975814
Target:  5'- gCGcGCCCGCGcGGGCGccgcggcGAGgGCGCc -3'
miRNA:   3'- gGCaCGGGCGCaUCUGU-------UUCaUGCGc -5'
23780 5' -53.2 NC_005261.1 + 114356 0.66 0.97556
Target:  5'- gCGUGgCCGCGgccgagucgguGGCcgaGAAGUACGUGc -3'
miRNA:   3'- gGCACgGGCGCau---------CUG---UUUCAUGCGC- -5'
23780 5' -53.2 NC_005261.1 + 71874 0.66 0.973454
Target:  5'- gCGguccGCCCGCGcGGGCAcgaaaAAGUGCuccGCGc -3'
miRNA:   3'- gGCa---CGGGCGCaUCUGU-----UUCAUG---CGC- -5'
23780 5' -53.2 NC_005261.1 + 43828 0.66 0.973454
Target:  5'- uCCGUggagaagcuGCUCgGCGaGGGCGAGG-ACGCGg -3'
miRNA:   3'- -GGCA---------CGGG-CGCaUCUGUUUCaUGCGC- -5'
23780 5' -53.2 NC_005261.1 + 30377 0.66 0.973182
Target:  5'- gCCGgGCgCCGCGgcgcgGGugGAGGUggaggacAUGCGg -3'
miRNA:   3'- -GGCaCG-GGCGCa----UCugUUUCA-------UGCGC- -5'
23780 5' -53.2 NC_005261.1 + 106813 0.66 0.970642
Target:  5'- gCCGagugGCCCGCcagcAGcGCGuGGUGCGCGu -3'
miRNA:   3'- -GGCa---CGGGCGca--UC-UGUuUCAUGCGC- -5'
23780 5' -53.2 NC_005261.1 + 124086 0.66 0.970642
Target:  5'- cCCGgcGCCCGCGUAG-CGc---GCGCa -3'
miRNA:   3'- -GGCa-CGGGCGCAUCuGUuucaUGCGc -5'
23780 5' -53.2 NC_005261.1 + 30277 0.66 0.967623
Target:  5'- cCCGcgcGCCCGCcUGGACGcuGgcccGCGCGc -3'
miRNA:   3'- -GGCa--CGGGCGcAUCUGUuuCa---UGCGC- -5'
23780 5' -53.2 NC_005261.1 + 31781 0.66 0.967623
Target:  5'- gCCGcggugcUGCCCGCG---GCGcAGUGCGCc -3'
miRNA:   3'- -GGC------ACGGGCGCaucUGUuUCAUGCGc -5'
23780 5' -53.2 NC_005261.1 + 112703 0.66 0.967623
Target:  5'- gCCGUGCCCGUGcaGGACcug--GCGUu -3'
miRNA:   3'- -GGCACGGGCGCa-UCUGuuucaUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.