miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23781 3' -56.2 NC_005261.1 + 127847 0.66 0.918745
Target:  5'- gCGGaCGGG-GCGGUCGcGGCGcCAgggcACGa -3'
miRNA:   3'- gGUC-GUCCaCGCCAGC-CUGCuGU----UGC- -5'
23781 3' -56.2 NC_005261.1 + 13952 0.66 0.918745
Target:  5'- cCCAGCcgcgcGGaaacgcGCGGUCagGGACGACGAa- -3'
miRNA:   3'- -GGUCGu----CCa-----CGCCAG--CCUGCUGUUgc -5'
23781 3' -56.2 NC_005261.1 + 116477 0.66 0.918745
Target:  5'- gCCGGCGcGG-GCGGggCGGGCG-CG-CGg -3'
miRNA:   3'- -GGUCGU-CCaCGCCa-GCCUGCuGUuGC- -5'
23781 3' -56.2 NC_005261.1 + 16408 0.66 0.918745
Target:  5'- cCgGGC-GGUGCGGgagaGGcccccuCGACGGCGg -3'
miRNA:   3'- -GgUCGuCCACGCCag--CCu-----GCUGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 29332 0.66 0.918745
Target:  5'- cCCGGCcGcGUgcgcuucgGCGGcgCGGGCGACAcucGCGa -3'
miRNA:   3'- -GGUCGuC-CA--------CGCCa-GCCUGCUGU---UGC- -5'
23781 3' -56.2 NC_005261.1 + 8503 0.66 0.918745
Target:  5'- gCCAGCGGG-GgGGcCGGccaauCG-CAGCGa -3'
miRNA:   3'- -GGUCGUCCaCgCCaGCCu----GCuGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 83652 0.66 0.918182
Target:  5'- gUCAGCGGcGUGaGG-CGGACGcgcgccugggcgcGCAGCGc -3'
miRNA:   3'- -GGUCGUC-CACgCCaGCCUGC-------------UGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 17142 0.66 0.918182
Target:  5'- gCCGGCGGGucgacguagaccgUcacccGCGGcgCGGGCGugGGCa -3'
miRNA:   3'- -GGUCGUCC-------------A-----CGCCa-GCCUGCugUUGc -5'
23781 3' -56.2 NC_005261.1 + 23632 0.66 0.913009
Target:  5'- gCGGCGGG---GGUCGGGCGGCu--- -3'
miRNA:   3'- gGUCGUCCacgCCAGCCUGCUGuugc -5'
23781 3' -56.2 NC_005261.1 + 109667 0.66 0.913009
Target:  5'- cCCGagcGCGGGUGCuGagCGGACGAgGgACGa -3'
miRNA:   3'- -GGU---CGUCCACGcCa-GCCUGCUgU-UGC- -5'
23781 3' -56.2 NC_005261.1 + 91157 0.66 0.913009
Target:  5'- cCCGGCGa--GUGGccCGGGCGGCAGCu -3'
miRNA:   3'- -GGUCGUccaCGCCa-GCCUGCUGUUGc -5'
23781 3' -56.2 NC_005261.1 + 127620 0.66 0.913009
Target:  5'- gCUAGCGGccgGcCGGaCGcGACGGCGGCGg -3'
miRNA:   3'- -GGUCGUCca-C-GCCaGC-CUGCUGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 2565 0.66 0.913009
Target:  5'- --cGCGGGcgUGUGGUacucccCGGGCGGCAcGCGg -3'
miRNA:   3'- gguCGUCC--ACGCCA------GCCUGCUGU-UGC- -5'
23781 3' -56.2 NC_005261.1 + 52984 0.66 0.913009
Target:  5'- gCCGGCAGGcggggGCGG-CGcccaGGCGuCGGCGc -3'
miRNA:   3'- -GGUCGUCCa----CGCCaGC----CUGCuGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 31675 0.66 0.913009
Target:  5'- gCGGCuGGccGCGG-CGcGGCGGCGGCu -3'
miRNA:   3'- gGUCGuCCa-CGCCaGC-CUGCUGUUGc -5'
23781 3' -56.2 NC_005261.1 + 32375 0.66 0.913009
Target:  5'- --cGCuGGUGCaGGcgCGGcGCGGCGGCGu -3'
miRNA:   3'- gguCGuCCACG-CCa-GCC-UGCUGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 128449 0.66 0.912422
Target:  5'- aCAGCGcG-GCGGUCGcgagcacGACGAgCAGCGa -3'
miRNA:   3'- gGUCGUcCaCGCCAGC-------CUGCU-GUUGC- -5'
23781 3' -56.2 NC_005261.1 + 98168 0.66 0.909455
Target:  5'- gCGGCGGGUGUguccuuggagccgccGGgggCGcGGCGgGCAGCGg -3'
miRNA:   3'- gGUCGUCCACG---------------CCa--GC-CUGC-UGUUGC- -5'
23781 3' -56.2 NC_005261.1 + 21825 0.66 0.90704
Target:  5'- gCGGCGGGcGCGcGUgCGGGCGggcucgccccGCAGCu -3'
miRNA:   3'- gGUCGUCCaCGC-CA-GCCUGC----------UGUUGc -5'
23781 3' -56.2 NC_005261.1 + 72810 0.66 0.90704
Target:  5'- uCCAGCaugaagaccucgAGGgccgcaagGCGGUCGGccaggGCGcCAGCGc -3'
miRNA:   3'- -GGUCG------------UCCa-------CGCCAGCC-----UGCuGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.