miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23781 5' -58.8 NC_005261.1 + 37858 0.77 0.194245
Target:  5'- cUUCGGCGUCCccgacgCCUGgcGGCGCGUGCUGg -3'
miRNA:   3'- -AAGCUGCGGGa-----GGAC--CCGUGCAUGAC- -5'
23781 5' -58.8 NC_005261.1 + 46489 0.77 0.199122
Target:  5'- cUCGGCGCCCUCCgcgGGGCGCa----- -3'
miRNA:   3'- aAGCUGCGGGAGGa--CCCGUGcaugac -5'
23781 5' -58.8 NC_005261.1 + 49806 0.77 0.204106
Target:  5'- -aCGuCGCCCUCCgcgGGGCGCGUGgaGu -3'
miRNA:   3'- aaGCuGCGGGAGGa--CCCGUGCAUgaC- -5'
23781 5' -58.8 NC_005261.1 + 131493 0.76 0.236322
Target:  5'- gUCGACGCCUUCUUccGGCACGUGCg- -3'
miRNA:   3'- aAGCUGCGGGAGGAc-CCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 43448 0.73 0.343045
Target:  5'- cUCGGCGCCUggacgucgCC-GGGCGgGUGCUGg -3'
miRNA:   3'- aAGCUGCGGGa-------GGaCCCGUgCAUGAC- -5'
23781 5' -58.8 NC_005261.1 + 38256 0.72 0.39115
Target:  5'- cUCGcACGCCagCCUGGGCugGgggcgGCUGg -3'
miRNA:   3'- aAGC-UGCGGgaGGACCCGugCa----UGAC- -5'
23781 5' -58.8 NC_005261.1 + 3924 0.72 0.408133
Target:  5'- -cCGGCGCcggCCUCCggguaggccaUGGGCGCGUACg- -3'
miRNA:   3'- aaGCUGCG---GGAGG----------ACCCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 64923 0.71 0.442541
Target:  5'- -gCGGCGUgCUCCUgcucgccgcccagGGGCGCGUGCg- -3'
miRNA:   3'- aaGCUGCGgGAGGA-------------CCCGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 101118 0.71 0.471025
Target:  5'- cUUGGCGCCCUCgUGGuccucGCGCGagGCUGc -3'
miRNA:   3'- aAGCUGCGGGAGgACC-----CGUGCa-UGAC- -5'
23781 5' -58.8 NC_005261.1 + 16483 0.71 0.480411
Target:  5'- -aCGACGCCCUCgUGGcGCAUGaACc- -3'
miRNA:   3'- aaGCUGCGGGAGgACC-CGUGCaUGac -5'
23781 5' -58.8 NC_005261.1 + 51198 0.7 0.489888
Target:  5'- cUCGccACGCCC-CC-GGGCGCGcUGCUGc -3'
miRNA:   3'- aAGC--UGCGGGaGGaCCCGUGC-AUGAC- -5'
23781 5' -58.8 NC_005261.1 + 38177 0.7 0.489888
Target:  5'- -aCGGCuGCCUggaggCCUGGGCgcgccgcgGCGUGCUGc -3'
miRNA:   3'- aaGCUG-CGGGa----GGACCCG--------UGCAUGAC- -5'
23781 5' -58.8 NC_005261.1 + 29185 0.7 0.49945
Target:  5'- -cCGGCGCCCUcgccgcggcgcCCgcgcGGGCGCGcgACUGg -3'
miRNA:   3'- aaGCUGCGGGA-----------GGa---CCCGUGCa-UGAC- -5'
23781 5' -58.8 NC_005261.1 + 75722 0.7 0.518817
Target:  5'- gUCGACGCCaucaccgcgcugCUCCUGGuGCGCcgccUGCUGu -3'
miRNA:   3'- aAGCUGCGG------------GAGGACC-CGUGc---AUGAC- -5'
23781 5' -58.8 NC_005261.1 + 37165 0.7 0.528612
Target:  5'- cUCGcgcGCGCUUgcgCCUGGGCGC-UGCUGg -3'
miRNA:   3'- aAGC---UGCGGGa--GGACCCGUGcAUGAC- -5'
23781 5' -58.8 NC_005261.1 + 108219 0.69 0.548399
Target:  5'- -aCGGCGCgCUCCagcaUGGcGCACGUGCc- -3'
miRNA:   3'- aaGCUGCGgGAGG----ACC-CGUGCAUGac -5'
23781 5' -58.8 NC_005261.1 + 117369 0.69 0.548399
Target:  5'- --aGGcCGCCCUCCUGGagGCGCGcUGCUu -3'
miRNA:   3'- aagCU-GCGGGAGGACC--CGUGC-AUGAc -5'
23781 5' -58.8 NC_005261.1 + 69210 0.69 0.55838
Target:  5'- -aCGACGUCCUCCgGGaGCuguGCGcGCUGg -3'
miRNA:   3'- aaGCUGCGGGAGGaCC-CG---UGCaUGAC- -5'
23781 5' -58.8 NC_005261.1 + 75654 0.69 0.568411
Target:  5'- -cCGGCGCgUUCCUGGcGCGCGcGCa- -3'
miRNA:   3'- aaGCUGCGgGAGGACC-CGUGCaUGac -5'
23781 5' -58.8 NC_005261.1 + 104908 0.68 0.608918
Target:  5'- --gGACGCCCUCCaGGGC-CGcGgUGa -3'
miRNA:   3'- aagCUGCGGGAGGaCCCGuGCaUgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.