miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23782 3' -58 NC_005261.1 + 22741 0.66 0.768862
Target:  5'- aGUCgGGcgCGGGGcggCGGCGGCCCAc -3'
miRNA:   3'- -UAGgUCaaGCUCCag-GUCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 92784 0.66 0.759226
Target:  5'- -cCCGGgcucggggUCGGGGUCCGGUcGCCgGg -3'
miRNA:   3'- uaGGUCa-------AGCUCCAGGUCGuCGGgUa -5'
23782 3' -58 NC_005261.1 + 22021 0.66 0.749473
Target:  5'- uUCCGGUUucucuccggCGGGGUUCAGgGGCuCCGg -3'
miRNA:   3'- uAGGUCAA---------GCUCCAGGUCgUCG-GGUa -5'
23782 3' -58 NC_005261.1 + 92304 0.66 0.729658
Target:  5'- -gCCAGgaUGAgcgccgcgcGGUCCGcGCGGCCCAUc -3'
miRNA:   3'- uaGGUCaaGCU---------CCAGGU-CGUCGGGUA- -5'
23782 3' -58 NC_005261.1 + 79148 0.67 0.719615
Target:  5'- -aCCAGcccggCGAGcaCCAGCAGCCCc- -3'
miRNA:   3'- uaGGUCaa---GCUCcaGGUCGUCGGGua -5'
23782 3' -58 NC_005261.1 + 93643 0.67 0.719615
Target:  5'- --gCAGcgCGAGGUCCGcGUAcGCCCAc -3'
miRNA:   3'- uagGUCaaGCUCCAGGU-CGU-CGGGUa -5'
23782 3' -58 NC_005261.1 + 54688 0.67 0.699306
Target:  5'- uGUCCAGgugcgCGAGG-CC-GCAGCUCGc -3'
miRNA:   3'- -UAGGUCaa---GCUCCaGGuCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 5205 0.67 0.699306
Target:  5'- cUCCGGgcCGAGGUCC-GCGGaCUCGa -3'
miRNA:   3'- uAGGUCaaGCUCCAGGuCGUC-GGGUa -5'
23782 3' -58 NC_005261.1 + 83292 0.67 0.687003
Target:  5'- -aCCAGgcacggcugcgCGGGGUCguGCAGCUCGg -3'
miRNA:   3'- uaGGUCaa---------GCUCCAGguCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 108920 0.69 0.595716
Target:  5'- --gCGGggUCGGGGcCCAGCAcGCCCAc -3'
miRNA:   3'- uagGUCa-AGCUCCaGGUCGU-CGGGUa -5'
23782 3' -58 NC_005261.1 + 43295 0.7 0.534335
Target:  5'- uUCCcg--CGGGGggcgCCGGCAGCCCGg -3'
miRNA:   3'- uAGGucaaGCUCCa---GGUCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 73889 0.71 0.465816
Target:  5'- uGUCCcugAGcUUCGAGGUgaaccugcagagCCGGCGGCCCGa -3'
miRNA:   3'- -UAGG---UC-AAGCUCCA------------GGUCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 124202 0.73 0.376591
Target:  5'- cGUCCGGUggcgugaacugCGuGGcugCCAGCAGCCCAa -3'
miRNA:   3'- -UAGGUCAa----------GCuCCa--GGUCGUCGGGUa -5'
23782 3' -58 NC_005261.1 + 71415 0.73 0.360178
Target:  5'- cGUCCGGcgCGGGGcCCGGCccgGGCCCGc -3'
miRNA:   3'- -UAGGUCaaGCUCCaGGUCG---UCGGGUa -5'
23782 3' -58 NC_005261.1 + 83626 0.73 0.336508
Target:  5'- gGUCCAGcgCGAGGUCCAGC-GCgUAc -3'
miRNA:   3'- -UAGGUCaaGCUCCAGGUCGuCGgGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.