miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23782 5' -61.4 NC_005261.1 + 59657 0.65 0.703625
Target:  5'- aGGCGGGCgACugcgGCCgGGUcGucgaagccgcccucGGCCAGCa -3'
miRNA:   3'- gCUGCCCGgUG----UGGgCCA-C--------------CUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 15984 0.66 0.700732
Target:  5'- --cCGGGCCGCucACCCGGgcagcgcgcuguaguUGacguugccgaaGGCCAGCa -3'
miRNA:   3'- gcuGCCCGGUG--UGGGCC---------------AC-----------CUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 97170 0.66 0.696867
Target:  5'- cCGGCuGGGUCGCggGCgCCGGccGGGCC-GCg -3'
miRNA:   3'- -GCUG-CCCGGUG--UG-GGCCa-CCUGGuCG- -5'
23782 5' -61.4 NC_005261.1 + 42675 0.66 0.696867
Target:  5'- gCGGcCGGGCCGC-CgCCGGcagccgcgcGGccGCCAGCu -3'
miRNA:   3'- -GCU-GCCCGGUGuG-GGCCa--------CC--UGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 83324 0.66 0.696867
Target:  5'- gGGCGGcGCCACgccGCCCGccgccaccGUGG-CCcGCa -3'
miRNA:   3'- gCUGCC-CGGUG---UGGGC--------CACCuGGuCG- -5'
23782 5' -61.4 NC_005261.1 + 109784 0.66 0.696867
Target:  5'- gGGCGucccGGCCGCugCUGcGacGGCCGGCg -3'
miRNA:   3'- gCUGC----CCGGUGugGGC-CacCUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 2983 0.66 0.696867
Target:  5'- aGGCugGGGCUcgGCCUGGcGGcCCGGCg -3'
miRNA:   3'- gCUG--CCCGGugUGGGCCaCCuGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 76956 0.66 0.696867
Target:  5'- aCGAC--GCCACGCCCGaagccuguGUGGcccccuuccGCCGGCu -3'
miRNA:   3'- -GCUGccCGGUGUGGGC--------CACC---------UGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 122308 0.66 0.696867
Target:  5'- -cGCaGGCgACGCCCGG---GCCGGCg -3'
miRNA:   3'- gcUGcCCGgUGUGGGCCaccUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 1418 0.66 0.696867
Target:  5'- gCGGCggGGGCgGCGCCCGccu--CCAGCa -3'
miRNA:   3'- -GCUG--CCCGgUGUGGGCcaccuGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 9879 0.66 0.692995
Target:  5'- cCGGCGagcccacccuagccGGCC-CGCCCGG-GGcaagcccgccccaGCCGGCc -3'
miRNA:   3'- -GCUGC--------------CCGGuGUGGGCCaCC-------------UGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 69764 0.66 0.687172
Target:  5'- gCGGgGGGCgGCG-CCGG-GGACUgAGCc -3'
miRNA:   3'- -GCUgCCCGgUGUgGGCCaCCUGG-UCG- -5'
23782 5' -61.4 NC_005261.1 + 64885 0.66 0.687172
Target:  5'- gCGGCGGGa-GCGCCgGGU---CCAGCa -3'
miRNA:   3'- -GCUGCCCggUGUGGgCCAccuGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 67392 0.66 0.687172
Target:  5'- aGACc-GCCGCGCgCGccaGGACCAGCg -3'
miRNA:   3'- gCUGccCGGUGUGgGCca-CCUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 4503 0.66 0.687172
Target:  5'- -cGCGGGCCccagucgcGCGCCCGcGcGGGCgccgCGGCg -3'
miRNA:   3'- gcUGCCCGG--------UGUGGGC-CaCCUG----GUCG- -5'
23782 5' -61.4 NC_005261.1 + 100119 0.66 0.687172
Target:  5'- gCGGCGcccgcaccGGCCGCAgccCCCGcucGGCCAGCg -3'
miRNA:   3'- -GCUGC--------CCGGUGU---GGGCcacCUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 106775 0.66 0.687172
Target:  5'- cCGGCGGccaGCCcagcgccgucuGCGCCCGcaccagcgccgaGUGGcccGCCAGCa -3'
miRNA:   3'- -GCUGCC---CGG-----------UGUGGGC------------CACC---UGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 17143 0.66 0.687172
Target:  5'- cCGGCGGGUCGacguagaccguCACCCGcggcgcgggcGUGGG-CAGCc -3'
miRNA:   3'- -GCUGCCCGGU-----------GUGGGC----------CACCUgGUCG- -5'
23782 5' -61.4 NC_005261.1 + 80062 0.66 0.677435
Target:  5'- gCGGCGGGCgCGggggGCgUGGgggacgcGGACCGGCg -3'
miRNA:   3'- -GCUGCCCG-GUg---UGgGCCa------CCUGGUCG- -5'
23782 5' -61.4 NC_005261.1 + 2819 0.66 0.677435
Target:  5'- nGGCGGccccaGCCcgaGCUCGGgcggcaGGGCCGGCg -3'
miRNA:   3'- gCUGCC-----CGGug-UGGGCCa-----CCUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.