miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 3' -56.9 NC_005261.1 + 97094 0.66 0.832815
Target:  5'- gGCUGGGcc--GGGG-GCGCCAgccgGGCc -3'
miRNA:   3'- gCGACCCacuaCCUCaCGCGGUa---CUG- -5'
23783 3' -56.9 NC_005261.1 + 13717 0.66 0.832815
Target:  5'- gGCggGGGUGGgggugGGGGUGgGCU-UGGCc -3'
miRNA:   3'- gCGa-CCCACUa----CCUCACgCGGuACUG- -5'
23783 3' -56.9 NC_005261.1 + 69927 0.67 0.80686
Target:  5'- cCGCaGGG-GGUGGGGUGggaGCCGggGAUa -3'
miRNA:   3'- -GCGaCCCaCUACCUCACg--CGGUa-CUG- -5'
23783 3' -56.9 NC_005261.1 + 26882 0.67 0.80686
Target:  5'- gGgUGGGUGggGGGGggcggggGCGCagAUGGCc -3'
miRNA:   3'- gCgACCCACuaCCUCa------CGCGg-UACUG- -5'
23783 3' -56.9 NC_005261.1 + 16188 0.67 0.80686
Target:  5'- gGCggGGGUGGgcgGGGGccGCGUgAUGGCc -3'
miRNA:   3'- gCGa-CCCACUa--CCUCa-CGCGgUACUG- -5'
23783 3' -56.9 NC_005261.1 + 125120 0.67 0.804181
Target:  5'- gCGCUcGGGUGGUGcGucuguGUccauagcaucgccgGCGCCGUGAUu -3'
miRNA:   3'- -GCGA-CCCACUAC-Cu----CA--------------CGCGGUACUG- -5'
23783 3' -56.9 NC_005261.1 + 27245 0.67 0.797876
Target:  5'- gCGCcugGGGUGGggcGGGGUGUGCg--GGCa -3'
miRNA:   3'- -GCGa--CCCACUa--CCUCACGCGguaCUG- -5'
23783 3' -56.9 NC_005261.1 + 51430 0.67 0.797876
Target:  5'- uGCUGGGcccc-GGGcGCGCCGUGAUg -3'
miRNA:   3'- gCGACCCacuacCUCaCGCGGUACUG- -5'
23783 3' -56.9 NC_005261.1 + 74451 0.67 0.788739
Target:  5'- gGCgGGG-GGUGGGG-GCGCCGcccccGGCg -3'
miRNA:   3'- gCGaCCCaCUACCUCaCGCGGUa----CUG- -5'
23783 3' -56.9 NC_005261.1 + 7180 0.68 0.731234
Target:  5'- gGCggagaagGGGggagGggGGGGUGCGCgugCGUGGCa -3'
miRNA:   3'- gCGa------CCCa---CuaCCUCACGCG---GUACUG- -5'
23783 3' -56.9 NC_005261.1 + 34484 0.69 0.701177
Target:  5'- uGCggcGGGUGcUGGAGUGgGUCGagGGCg -3'
miRNA:   3'- gCGa--CCCACuACCUCACgCGGUa-CUG- -5'
23783 3' -56.9 NC_005261.1 + 35769 0.69 0.680829
Target:  5'- gGCUcGGGccGAgacaGGAGgcccgcggGCGCCAUGGCg -3'
miRNA:   3'- gCGA-CCCa-CUa---CCUCa-------CGCGGUACUG- -5'
23783 3' -56.9 NC_005261.1 + 111100 0.69 0.650022
Target:  5'- gGCcGGGgacugGGUGGAGUGCuuCCAcUGACg -3'
miRNA:   3'- gCGaCCCa----CUACCUCACGc-GGU-ACUG- -5'
23783 3' -56.9 NC_005261.1 + 43799 0.71 0.56782
Target:  5'- cCGC-GGGUGA-GGGG-GCGCCG-GGCg -3'
miRNA:   3'- -GCGaCCCACUaCCUCaCGCGGUaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.