miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 97497 0.66 0.828743
Target:  5'- --uUGGgGGCGCCgGGgCcGCCgGAACg -3'
miRNA:   3'- ucuACCaCCGCGGgCC-GuUGGgUUUG- -5'
23783 5' -57.5 NC_005261.1 + 38239 0.66 0.828743
Target:  5'- cGGAgcGG-GGCGCCgGGCucgcacgccAGCCUggGCu -3'
miRNA:   3'- -UCUa-CCaCCGCGGgCCG---------UUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 105960 0.66 0.827897
Target:  5'- cGAUGGccucGGCGCCCaGCGcggcgucgacgccGCCCGc-- -3'
miRNA:   3'- uCUACCa---CCGCGGGcCGU-------------UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 122334 0.66 0.827897
Target:  5'- ---aGGUGGCgcucgcagagcucGCCUGGCGGCCgCGGcucGCg -3'
miRNA:   3'- ucuaCCACCG-------------CGGGCCGUUGG-GUU---UG- -5'
23783 5' -57.5 NC_005261.1 + 121057 0.66 0.823637
Target:  5'- cGGUuGUGGCGCgcggugugcgcggcgCCGGCGGCCgCcAGCg -3'
miRNA:   3'- uCUAcCACCGCG---------------GGCCGUUGG-GuUUG- -5'
23783 5' -57.5 NC_005261.1 + 58999 0.66 0.820198
Target:  5'- cGgcGGUG-CGCCgGGCucGCCCAGcgGCg -3'
miRNA:   3'- uCuaCCACcGCGGgCCGu-UGGGUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 31402 0.66 0.820198
Target:  5'- -cGUGGUGGUGCUCuaCGACCCGc-- -3'
miRNA:   3'- ucUACCACCGCGGGccGUUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 30903 0.66 0.820198
Target:  5'- cGGGcUGG-GGcCGCCCGGCcccuCCCGGc- -3'
miRNA:   3'- -UCU-ACCaCC-GCGGGCCGuu--GGGUUug -5'
23783 5' -57.5 NC_005261.1 + 118901 0.66 0.820198
Target:  5'- --cUGGUGGCcugcgucuggGUCCGGC-GCCgCGGGCg -3'
miRNA:   3'- ucuACCACCG----------CGGGCCGuUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 127677 0.66 0.81148
Target:  5'- gGGAcGGcGGCGgccgcugcCCCGGCGGCgCCGGAg -3'
miRNA:   3'- -UCUaCCaCCGC--------GGGCCGUUG-GGUUUg -5'
23783 5' -57.5 NC_005261.1 + 67110 0.66 0.81148
Target:  5'- uGcgGGcGGCGCgcgcagugCGGCGGCCCGAccGCg -3'
miRNA:   3'- uCuaCCaCCGCGg-------GCCGUUGGGUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 88148 0.66 0.81148
Target:  5'- cGcgGG-GGCGcCCCGGCcgcgcagccgGGCCgGGGCg -3'
miRNA:   3'- uCuaCCaCCGC-GGGCCG----------UUGGgUUUG- -5'
23783 5' -57.5 NC_005261.1 + 50568 0.66 0.81148
Target:  5'- ---cGGUcacGCGCCUGGCGuccGCCgCGAGCg -3'
miRNA:   3'- ucuaCCAc--CGCGGGCCGU---UGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 29798 0.66 0.81148
Target:  5'- cGGA-GGccGGCG-CCGGCGGCgCGGGCg -3'
miRNA:   3'- -UCUaCCa-CCGCgGGCCGUUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 113579 0.66 0.810599
Target:  5'- cGGUGGccgccGCGCUgGGCGaccucgcGCCCGGGCa -3'
miRNA:   3'- uCUACCac---CGCGGgCCGU-------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 12128 0.66 0.807947
Target:  5'- aGGAUGGcgcccgccgccgcGGCGgCCGcGCAGgcCCCAAGCc -3'
miRNA:   3'- -UCUACCa------------CCGCgGGC-CGUU--GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 100810 0.66 0.802598
Target:  5'- cGGAaGGgcgcGuGCGCCUGcGCcGCCCAGGCc -3'
miRNA:   3'- -UCUaCCa---C-CGCGGGC-CGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 127765 0.66 0.802598
Target:  5'- ---cGGcgGGCgcgaagacGCCCGGCuGCUCGAGCg -3'
miRNA:   3'- ucuaCCa-CCG--------CGGGCCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 134213 0.66 0.802598
Target:  5'- cGcgGGUcgcGGCGgCCGGCAGCgUcgGCg -3'
miRNA:   3'- uCuaCCA---CCGCgGGCCGUUGgGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 132906 0.66 0.802598
Target:  5'- cGcgGGcGGCGCCgagCGGCGGCUCcuGCc -3'
miRNA:   3'- uCuaCCaCCGCGG---GCCGUUGGGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.