miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 127765 0.66 0.802598
Target:  5'- ---cGGcgGGCgcgaagacGCCCGGCuGCUCGAGCg -3'
miRNA:   3'- ucuaCCa-CCG--------CGGGCCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 12128 0.66 0.807947
Target:  5'- aGGAUGGcgcccgccgccgcGGCGgCCGcGCAGgcCCCAAGCc -3'
miRNA:   3'- -UCUACCa------------CCGCgGGC-CGUU--GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 65807 0.66 0.8017
Target:  5'- cGGGUcGG-GGUGCCCGgGCGgcggcgcgaagcuGCCCGAGu -3'
miRNA:   3'- -UCUA-CCaCCGCGGGC-CGU-------------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 132906 0.66 0.802598
Target:  5'- cGcgGGcGGCGCCgagCGGCGGCUCcuGCc -3'
miRNA:   3'- uCuaCCaCCGCGG---GCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 4932 0.66 0.784373
Target:  5'- ---cGGccgcGaGCGCCCGcgccGCGGCCCAGGCg -3'
miRNA:   3'- ucuaCCa---C-CGCGGGC----CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 100810 0.66 0.802598
Target:  5'- cGGAaGGgcgcGuGCGCCUGcGCcGCCCAGGCc -3'
miRNA:   3'- -UCUaCCa---C-CGCGGGC-CGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 134213 0.66 0.802598
Target:  5'- cGcgGGUcgcGGCGgCCGGCAGCgUcgGCg -3'
miRNA:   3'- uCuaCCA---CCGCgGGCCGUUGgGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 118854 0.66 0.784373
Target:  5'- cGGAgGGcGGCGCgCCcGCGGCCCuGGCc -3'
miRNA:   3'- -UCUaCCaCCGCG-GGcCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 28716 0.66 0.784373
Target:  5'- ---cGG-GGgGCCCGGgGGCCUcgGCg -3'
miRNA:   3'- ucuaCCaCCgCGGGCCgUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 2809 0.66 0.784373
Target:  5'- ---gGGaGGgGCCgGGCGGCCCcAGCc -3'
miRNA:   3'- ucuaCCaCCgCGGgCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 127313 0.66 0.784373
Target:  5'- uGgcGGUGGgGCCCuGCcGCCCGc-- -3'
miRNA:   3'- uCuaCCACCgCGGGcCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 51516 0.66 0.792647
Target:  5'- cAGAUGcugGGCGCCgGGCuggggcugucgcuAGCgCAGACa -3'
miRNA:   3'- -UCUACca-CCGCGGgCCG-------------UUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 92934 0.66 0.802598
Target:  5'- ---cGGcGGagcagcuGCCCGGCGuCCCGGACa -3'
miRNA:   3'- ucuaCCaCCg------CGGGCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 61569 0.66 0.792647
Target:  5'- uGAUGGUGGCGCuggugauggCCguguucgugGGCAgccucccGCCCAccGACa -3'
miRNA:   3'- uCUACCACCGCG---------GG---------CCGU-------UGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 113579 0.66 0.810599
Target:  5'- cGGUGGccgccGCGCUgGGCGaccucgcGCCCGGGCa -3'
miRNA:   3'- uCUACCac---CGCGGgCCGU-------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 38239 0.66 0.828743
Target:  5'- cGGAgcGG-GGCGCCgGGCucgcacgccAGCCUggGCu -3'
miRNA:   3'- -UCUa-CCaCCGCGGgCCG---------UUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 68964 0.66 0.793559
Target:  5'- gGGAccUGGUGcGCGCCaCcGCGGCCCu--- -3'
miRNA:   3'- -UCU--ACCAC-CGCGG-GcCGUUGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 52727 0.66 0.78159
Target:  5'- gAGAUGc-GGCGCCgCGGCGcgaucggggaagugGCCCGcgagGACg -3'
miRNA:   3'- -UCUACcaCCGCGG-GCCGU--------------UGGGU----UUG- -5'
23783 5' -57.5 NC_005261.1 + 86654 0.66 0.792647
Target:  5'- gAGuUGGagcugaacaccaUGGCGCCCaccagcccggcgaGGCGGCCCAcguACg -3'
miRNA:   3'- -UCuACC------------ACCGCGGG-------------CCGUUGGGUu--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.