Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23783 | 5' | -57.5 | NC_005261.1 | + | 106123 | 0.67 | 0.765595 |
Target: 5'- ---cGGcgcGcGCGCgCCGGCAACgCCGGACa -3' miRNA: 3'- ucuaCCa--C-CGCG-GGCCGUUG-GGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 84270 | 0.67 | 0.765595 |
Target: 5'- cGGcAUGGcgcaGGUGCcgCCGGCGGCCCcGGCc -3' miRNA: 3'- -UC-UACCa---CCGCG--GGCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 107799 | 0.67 | 0.756021 |
Target: 5'- aGGA-GGgccucGCGCgCGGCGGCCCuAGCg -3' miRNA: 3'- -UCUaCCac---CGCGgGCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 100277 | 0.67 | 0.756021 |
Target: 5'- ---cGGUGGCGCacgaagCGGCAGaaggcCCCAAAg -3' miRNA: 3'- ucuaCCACCGCGg-----GCCGUU-----GGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 87596 | 0.67 | 0.756021 |
Target: 5'- cGGUGGUcuuGGUG-CCGGCGACCaccGCg -3' miRNA: 3'- uCUACCA---CCGCgGGCCGUUGGguuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 55190 | 0.67 | 0.756021 |
Target: 5'- cGGAUcGGcgcacGGCGUagcgcggauCCGGCGGCCCGAGg -3' miRNA: 3'- -UCUA-CCa----CCGCG---------GGCCGUUGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 70982 | 0.67 | 0.765595 |
Target: 5'- aAGAgcgcGUGGCGCgCgGGCGGCcgCCAGGCc -3' miRNA: 3'- -UCUac--CACCGCG-GgCCGUUG--GGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 134143 | 0.67 | 0.775049 |
Target: 5'- --cUGGgcuGCGCCUGGCGccACCCGGGg -3' miRNA: 3'- ucuACCac-CGCGGGCCGU--UGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 18533 | 0.67 | 0.775049 |
Target: 5'- uGAcGGcGGCGUCCcGCGGCCCGcugGGCa -3' miRNA: 3'- uCUaCCaCCGCGGGcCGUUGGGU---UUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 72446 | 0.67 | 0.775049 |
Target: 5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3' miRNA: 3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 125418 | 0.67 | 0.775049 |
Target: 5'- cGcgGGcGGCGCUCaGGCcGCCCAu-- -3' miRNA: 3'- uCuaCCaCCGCGGG-CCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 60327 | 0.67 | 0.750223 |
Target: 5'- cAGGUGGacgacgguguuugcGGCGCCgCGGCcgcGCgCCAGGCa -3' miRNA: 3'- -UCUACCa-------------CCGCGG-GCCGu--UG-GGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71076 | 0.68 | 0.726674 |
Target: 5'- cGGcgGGcggGGCGUCCGG--GCCCGAGa -3' miRNA: 3'- -UCuaCCa--CCGCGGGCCguUGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 43802 | 0.68 | 0.726674 |
Target: 5'- cGGGUGaGggGGCGCCgGGCGcGCCCu--- -3' miRNA: 3'- -UCUAC-Ca-CCGCGGgCCGU-UGGGuuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 113912 | 0.68 | 0.726674 |
Target: 5'- cGAUGGccgaGGCagcggGCgCGGCGACCCucGCa -3' miRNA: 3'- uCUACCa---CCG-----CGgGCCGUUGGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 3349 | 0.68 | 0.723694 |
Target: 5'- ------cGGCGCCCGGCGcgccggccuucaggGCCgCGAGCg -3' miRNA: 3'- ucuaccaCCGCGGGCCGU--------------UGG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 31246 | 0.68 | 0.716714 |
Target: 5'- cGAgcccUGGCGCCCGGCGcucgccuucgACCCcgAGGCg -3' miRNA: 3'- uCUacc-ACCGCGGGCCGU----------UGGG--UUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 89274 | 0.68 | 0.716714 |
Target: 5'- cGAcgGGcUGGCGuuCCCGGCGGCCgCcAACg -3' miRNA: 3'- uCUa-CC-ACCGC--GGGCCGUUGG-GuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 23001 | 0.68 | 0.716714 |
Target: 5'- aAGA-GG-GGgGCCCggaGGCGGCCCGcgAACg -3' miRNA: 3'- -UCUaCCaCCgCGGG---CCGUUGGGU--UUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97764 | 0.68 | 0.706681 |
Target: 5'- ---cGGcGGCGCggCCGGCAucgacuCCCGAGCc -3' miRNA: 3'- ucuaCCaCCGCG--GGCCGUu-----GGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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