miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 30711 0.68 0.696584
Target:  5'- cGcgGGagccccGGCGCCgGGCcgccaGGCCCGAGCc -3'
miRNA:   3'- uCuaCCa-----CCGCGGgCCG-----UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 52975 0.68 0.706681
Target:  5'- ---cGGUgcGGCG-CCGGCAggcgggggcggcGCCCAGGCg -3'
miRNA:   3'- ucuaCCA--CCGCgGGCCGU------------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 43802 0.68 0.726674
Target:  5'- cGGGUGaGggGGCGCCgGGCGcGCCCu--- -3'
miRNA:   3'- -UCUAC-Ca-CCGCGGgCCGU-UGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 71076 0.68 0.726674
Target:  5'- cGGcgGGcggGGCGUCCGG--GCCCGAGa -3'
miRNA:   3'- -UCuaCCa--CCGCGGGCCguUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 89274 0.68 0.716714
Target:  5'- cGAcgGGcUGGCGuuCCCGGCGGCCgCcAACg -3'
miRNA:   3'- uCUa-CC-ACCGC--GGGCCGUUGG-GuUUG- -5'
23783 5' -57.5 NC_005261.1 + 23001 0.68 0.716714
Target:  5'- aAGA-GG-GGgGCCCggaGGCGGCCCGcgAACg -3'
miRNA:   3'- -UCUaCCaCCgCGGG---CCGUUGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 97764 0.68 0.706681
Target:  5'- ---cGGcGGCGCggCCGGCAucgacuCCCGAGCc -3'
miRNA:   3'- ucuaCCaCCGCG--GGCCGUu-----GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 85278 0.68 0.706681
Target:  5'- uGggGGUuaGGCGUCgGGCu-CCCGGGCg -3'
miRNA:   3'- uCuaCCA--CCGCGGgCCGuuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 113912 0.68 0.726674
Target:  5'- cGAUGGccgaGGCagcggGCgCGGCGACCCucGCa -3'
miRNA:   3'- uCUACCa---CCG-----CGgGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 121779 0.69 0.614589
Target:  5'- gGGGUGGccGCGgCCGGCGGgCUggGCa -3'
miRNA:   3'- -UCUACCacCGCgGGCCGUUgGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 5576 0.69 0.63517
Target:  5'- gAGAUGGgGGCGCCgagGGC-GCCCGc-- -3'
miRNA:   3'- -UCUACCaCCGCGGg--CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 123114 0.69 0.63517
Target:  5'- gGGAaaGUGGCGCuuGGCA-UUCAAGCg -3'
miRNA:   3'- -UCUacCACCGCGggCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 95036 0.69 0.63517
Target:  5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3'
miRNA:   3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97027 0.69 0.63517
Target:  5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3'
miRNA:   3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 123283 0.69 0.644432
Target:  5'- cGGGUGGUccgccaGCGCCuccgcgauguccaCGaGCGGCCCAAGCa -3'
miRNA:   3'- -UCUACCAc-----CGCGG-------------GC-CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 65396 0.69 0.655741
Target:  5'- cGGcgGGUugGGCGgcCCCGGCAGCuCCAc-- -3'
miRNA:   3'- -UCuaCCA--CCGC--GGGCCGUUG-GGUuug -5'
23783 5' -57.5 NC_005261.1 + 22650 0.69 0.666003
Target:  5'- uAGAcgcgcUGGcGGCGCCUgGGCGgcGCCCGAGu -3'
miRNA:   3'- -UCU-----ACCaCCGCGGG-CCGU--UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 76593 0.69 0.666003
Target:  5'- gAGcgGGUGGCGCgCGcGCugccGCCCGc-- -3'
miRNA:   3'- -UCuaCCACCGCGgGC-CGu---UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 94292 0.69 0.666003
Target:  5'- cAGAgcaUGGCGUagUCGGCGACCCAGGg -3'
miRNA:   3'- -UCUaccACCGCG--GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 91150 0.69 0.645461
Target:  5'- ----cGUGcCGCCCGGCGagugGCCCGGGCg -3'
miRNA:   3'- ucuacCACcGCGGGCCGU----UGGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.